PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.001G478400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26288.8 Da PI: 8.4735 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.4 | 2.5e-25 | 12 | 61 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s Sobic.001G478400.1.p 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFAS 61 89********************************************9986 PP | |||||||
2 | K-box | 44 | 9.1e-16 | 94 | 174 | 19 | 99 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 a+Lk+e+ + ++R++ Ge+L++Ls+++Lq+Le+ Le++l ++ ++K++ +l++i+ l +k el een +L+++l+ Sobic.001G478400.1.p 94 GTCARLKQELAETSLKLRQMRGEELQRLSVQQLQELEKTLESGLGSVLKTKSQKILDEISGLERKRMELIEENSRLKEQLQ 174 45789************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.151 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-33 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-29 | 5 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.39E-37 | 5 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-24 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-24 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-24 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-24 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.908 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.3E-14 | 96 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MAGKRERIAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLFHFA 60 STSMKQVIDR YDSHSKNLQK SEAPSQLQSH IDDGTCARLK QELAETSLKL RQMRGEELQR 120 LSVQQLQELE KTLESGLGSV LKTKSQKILD EISGLERKRM ELIEENSRLK EQLQVTRMAR 180 METQLGVDSE IVYEEGQSSE SVTNTSYPRP STDTDDCSDT SLRLGLPFFS SK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-19 | 5 | 75 | 3 | 73 | MEF2C |
5f28_B | 6e-19 | 5 | 75 | 3 | 73 | MEF2C |
5f28_C | 6e-19 | 5 | 75 | 3 | 73 | MEF2C |
5f28_D | 6e-19 | 5 | 75 | 3 | 73 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sbi.644 | 0.0 | embryo| leaf| pollen| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots and developing panicles. {ECO:0000269|PubMed:15682279}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.001G478400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FJ009259 | 0.0 | FJ009259.1 Saccharum officinarum MADS box protein mRNA, complete cds. | |||
GenBank | FJ608826 | 0.0 | FJ608826.1 Saccharum arundinaceum MADS box transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021307340.1 | 1e-168 | MADS-box transcription factor 47-like isoform X1 | ||||
Refseq | XP_021307341.1 | 1e-168 | MADS-box transcription factor 47-like isoform X1 | ||||
Swissprot | Q5K4R0 | 1e-127 | MAD47_ORYSJ; MADS-box transcription factor 47 | ||||
TrEMBL | A0A1B6QQ24 | 1e-167 | A0A1B6QQ24_SORBI; Uncharacterized protein | ||||
STRING | Sb01g044810.1 | 1e-167 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1221 | 36 | 97 | Representative plant | OGRP6076 | 11 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22540.1 | 3e-76 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.001G478400.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|