PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G476500.1.p
Common NameSb01g044640, SORBIDRAFT_01g044640
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 358aa    MW: 37675.1 Da    PI: 6.3487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G476500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-14127178155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++ + + a+i+  A++Y+++L+
  Sobic.001G476500.1.p 127 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 178
                           79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.6E-14125182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.96E-15125182No hitNo description
PROSITE profilePS5088816.075126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17126193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-11127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MALEAVVFSQ PQAAGHFGYA MPWCDLQLLQ GGGGGGGGGG GFGDLCAAAG EWDHDLDTCW  60
AAPTMAAVGG DDWDWEALSR DQSSDASTDH GNSRKAAVAP EPAAAAAGRR KRRRTKVVKN  120
KEEIESQRMT HIAVERNRRR QMNEYLAVLR SLMPPSYAHR GDQASIVGGA INYVRELEQL  180
LQSLEVQKSI KSRGSSAGST DAGSSSSPFA GFFSFPQYST TTSAHGGGCS GNTSNGGNCS  240
DAVAAASAAG SAETGCRRPA AAAVADIEVT MVEGHASLKV LARRRPKQLL KLVAGLHQLR  300
IPPLHLNMTT VDAMVLYTFS LKVEDDSKMG SVEDIATAVH EILGSIQQQQ EEETAVM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109113RKRRR
2109114RKRRRT
3127138RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G476500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420301e-137BT042030.1 Zea mays full-length cDNA clone ZM_BFb0114I01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468361.10.0transcription factor bHLH96
TrEMBLC5WUU80.0C5WUU8_SORBI; Uncharacterized protein
STRINGSb01g044640.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-28bHLH family protein