PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G474600.1.p
Common NameSb01g044480, SORBIDRAFT_01g044480
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CAMTA
Protein Properties Length: 995aa    MW: 110359 Da    PI: 5.9459
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G474600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1137.15.9e-43149636118
                  CG-1  36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                            gsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+v+vl+cyYah+e n++fqrr+yw+Lee++ +ivlvhylevk
  Sobic.001G474600.1.p  14 GGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSVDVLHCYYAHGEGNENFQRRSYWMLEEDFMHIVLVHYLEVK 96 
                           58******************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143760.6761101IPR005559CG-1 DNA-binding domain
SMARTSM010769.2E-47196IPR005559CG-1 DNA-binding domain
PfamPF038596.2E-361495IPR005559CG-1 DNA-binding domain
CDDcd001022.02E-5405492No hitNo description
Gene3DG3DSA:2.60.40.108.8E-8405490IPR013783Immunoglobulin-like fold
PfamPF018335.9E-10406484IPR002909IPT domain
SuperFamilySSF812963.85E-18406491IPR014756Immunoglobulin E-set
SuperFamilySSF484031.87E-17585700IPR020683Ankyrin repeat-containing domain
CDDcd002047.45E-15586698No hitNo description
Gene3DG3DSA:1.25.40.207.6E-18597702IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.324597710IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.351606638IPR002110Ankyrin repeat
SMARTSM002480.013639668IPR002110Ankyrin repeat
PROSITE profilePS500888.736639671IPR002110Ankyrin repeat
SMARTSM002483500678707IPR002110Ankyrin repeat
SuperFamilySSF525401.51E-8810863IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.96812834IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.078813842IPR000048IQ motif, EF-hand binding site
PfamPF006120.0067815833IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022835857IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578836860IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-4838857IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 995 aa     Download sequence    Send to blast
MAEARRHAIA PQLGGSLFLF DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSVDVLH  60
CYYAHGEGNE NFQRRSYWML EEDFMHIVLV HYLEVKGGKS TSRIRGHDDM LQAARTDSPL  120
SQLPSQTTEG ESSLSGQASE YEETESDIYS GGSGYHPFSW TQQHENGGGP VMGASIPSSY  180
IPALSLGNFQ GFPATVTNTD IYSYCQDALP GALNEPGLGV GFNGADNQVD PSSLNGLVKP  240
DQGILQMSPP QSTVPSELFP FAEGHGIESF TFDEVYGNGL SIKDADVIGT DEESVWQLPG  300
AISSFPPEDS FQQNDRSLEE NINYPLLKTQ SSSLSEMLKD SFKKSDSFTR WMSKALGEVD  360
DSQIKSSSGV YWNSEETDNI IEASSRDQLD QFTLDPVLAQ DQLFSIDDFS PSWTYAGSKT  420
RVLITGRFLN SNEIQRCKWS CMFGEVEVPA EVSADGTLRC YSPSHKPGRV PFYVTCTNRL  480
ACSEIREFEF RPSVTQYMDA PSPHGATNKT YLQMRLDDLL SLGHNEYQAT VSNPTKEMVD  540
LSKKISSLMT SNDSWSKLLK LASDNEPATD HNQDQFFEKR LKEKLHIWLV HKARDGGKGP  600
NVLDDEGQGV LHLAAALGYD WVIRPTVSAG VNINFRDAHG WTALHWAAFC GRERTVVALI  660
ALGAAPGALT DPTPDFPTGS TPADLASANG YKGISGFLAE SSLTSHLQTL DLKEGKGSNA  720
PEISGLPGIG DVTERRASPL AGEGLQAGSV GDSLGAVRNA AQAAARIYQV FRVQSFQRKQ  780
AVQYEDGNGA VSDDRAISLL SVKPSKPVQL DPLHTAATRI QNKYRGWKGR KEFLLIRQRI  840
VKIQAHVRGH QVRKHYRKII WSVGIVEKVI LRWRRKGAGL RGFRSTEGAM EGNSSSSSNL  900
IQNKPAEDDY DFLQQGRKQT EERLQKALAR VKSMAQYPDA RDQYQRILTV VTKIQESQAM  960
QEKMLDESTE MDEGFFMSEF KELWDDDVPM PSWS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.125360.0callus| embryo| ovary| panicle| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G474600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321933.10.0calmodulin-binding transcription activator 1 isoform X2
TrEMBLA0A1Z5SAZ00.0A0A1Z5SAZ0_SORBI; Uncharacterized protein
STRINGSb01g044480.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains