PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G473900.1.p
Common NameSb01g044410, SORBIDRAFT_01g044410
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 318aa    MW: 33745.7 Da    PI: 7.6686
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G473900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20126175255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+g
  Sobic.001G473900.1.p 126 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRG 175
                           59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.87E-33125185No hitNo description
PROSITE profilePS5103223.604126183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-33126184IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23126183IPR016177DNA-binding domain
SMARTSM003801.8E-38126189IPR001471AP2/ERF domain
PfamPF008471.6E-14127175IPR001471AP2/ERF domain
PRINTSPR003672.8E-11127138IPR001471AP2/ERF domain
PRINTSPR003672.8E-11149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAATTIDWHG RNAALYGVAD RDSKELVRAL APPMQQAAPT ISFAYPCSGV EQQSAAAAAG  60
SFLGAGGSSG LLTPAQILQL QSRLQFLRRP AAGGATLAAV TTQQMKRQGV PQAPAPLTSR  120
PAVSKLYRGV RQRHWGKWVA EIRLPRNRTR LWLGTFDTAE EAALAYDSAA FRLRGDSARL  180
NFPELRRGGQ HLGPPLHAAV DAKLHAICNG TTDVVVPLPQ SQSQSQSQSQ SHATTATATT  240
TPSSLSSASP HVKSEPGCSG SESSFSADGD VSSTGSSDVV PEMQLLDFSE APWDESESFH  300
LRKYPSLEID WDSILIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-21122183163ATERF1
3gcc_A7e-21122183163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.94680.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G473900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9646520.0EU964652.1 Zea mays clone 280610 DRE binding factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465715.10.0ethylene-responsive transcription factor RAP2-13
SwissprotQ8H1E41e-54RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLC5WUS40.0C5WUS4_SORBI; Uncharacterized protein
STRINGSb01g044410.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.16e-41related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]