PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G468400.1.p | ||||||||
Common Name | Sb01g043910, SORBIDRAFT_01g043910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 243aa MW: 26596.8 Da PI: 6.3797 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.1 | 3.1e-18 | 58 | 111 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k Sobic.001G468400.1.p 58 KKRRLSDEQARFLELSFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 111 56689***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 109.6 | 2.2e-35 | 58 | 149 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kkrrls+eq+++LE sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e +++++ Sobic.001G468400.1.p 58 KKRRLSDEQARFLELSFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFSKLRAAHDAVVLQNCHLETELLKMKDR 146 9**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 l+e Sobic.001G468400.1.p 147 LEE 149 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-16 | 53 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.633 | 53 | 113 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-15 | 56 | 117 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.69E-16 | 57 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.00E-15 | 58 | 113 | No hit | No description |
Pfam | PF00046 | 1.3E-15 | 58 | 111 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.4E-6 | 84 | 93 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 88 | 111 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.4E-6 | 93 | 109 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGCEEEERLL FPSFVFPESF AEAATPGSGG EQKKARQRRR RKPRPAADGG EGGDEQAKKR 60 RLSDEQARFL ELSFRKERKL ETPRKVQLAA ELGLDAKQVA VWFQNRRARH KSKLMEEEFS 120 KLRAAHDAVV LQNCHLETEL LKMKDRLEEA EEEKRKVIAA AAAAGGGGGG AGAGSSSPSS 180 SSFSTVTHNP AALVGQFGVD PEEAAADLTY MSEYAYNSYM NMMDMDLAPG GYFGGVVYDH 240 FN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 43 | RRRRKPR |
2 | 39 | 60 | RRKPRPAADGGEGGDEQAKKRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G468400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043163 | 0.0 | BT043163.2 Zea mays full-length cDNA clone ZM_BFc0114N11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465695.1 | 1e-178 | homeobox-leucine zipper protein HOX12 | ||||
Swissprot | Q10QF2 | 2e-91 | HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12 | ||||
TrEMBL | C5WTV6 | 1e-176 | C5WTV6_SORBI; Uncharacterized protein | ||||
STRING | Sb01g043910.1 | 1e-177 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 | Representative plant | OGRP3776 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66700.1 | 3e-34 | homeobox 53 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G468400.1.p |
Entrez Gene | 8081882 |
Publications ? help Back to Top | |||
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