PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G459400.4.p
Common NameSb01g043110, SORBIDRAFT_01g043110
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 265aa    MW: 30222.3 Da    PI: 6.6308
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G459400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-169103198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                           ffk+l+p ++     l+lp kf e  g    ++ +l+l+  e    W+v++ ++ k g ++l kGWk+F++a++L+ g ++vF++d++ 
  Sobic.001G459400.4.p   9 FFKILIPGMYE--EALRLPTKFGEILGAR--RDLKLRLTGgEMMPLWDVEVFVDEKNGDMYLHKGWKKFARAHDLRKGYMLVFRYDDDG 93 
                           78888554444..459*******555644..666888888555599*****99999999***************************99* PP

                           EE..EEEEE- CS
                    B3  89 efelvvkvfr 98 
                           ++ lvv+vf+
  Sobic.001G459400.4.p  94 RGDLVVTVFD 103
                           ********98 PP
2B342.41.2e-131512271087
                           HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr 87 
                           + +++ l +p +f ++hg++ ++ ++l+     grsW v+l+   +++       ++ GW +F+ +ngLk+gD++ F+++++
  Sobic.001G459400.4.p 151 AKQNQYLNVPVEFQDAHGYVRRRRVELQ---MGGRSWMVNLKR--SKRLlgdrSSFKYGWHQFCVDNGLKVGDVCFFRVIRE 227
                           56678899************88875555...478*******44..433233458899*********************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.25E-177103No hitNo description
PROSITE profilePS5086312.4787105IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-178111IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-139103IPR003340B3 DNA binding domain
SMARTSM010191.4E-99105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-159106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-23136228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16137228IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.378142259IPR003340B3 DNA binding domain
SMARTSM010190.0021144234IPR003340B3 DNA binding domain
PfamPF023621.5E-10153227IPR003340B3 DNA binding domain
CDDcd100177.32E-11157230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAGLSDFEFF KILIPGMYEE ALRLPTKFGE ILGARRDLKL RLTGGEMMPL WDVEVFVDEK  60
NGDMYLHKGW KKFARAHDLR KGYMLVFRYD DDGRGDLVVT VFDLTTCRKE YLHAGAGGGG  120
NTNPGAGGGR SLPIAEPSHF AVTLRQCNLE AKQNQYLNVP VEFQDAHGYV RRRRVELQMG  180
GRSWMVNLKR SKRLLGDRSS FKYGWHQFCV DNGLKVGDVC FFRVIREGSR CGDDDEDEEW  240
EPEEEDDEHV LKVEVRKKNG TFVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G459400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311974.10.0B3 domain-containing protein Os03g0212300
SwissprotQ10Q266e-78Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A1Z5SAS40.0A0A1Z5SAS4_SORBI; Uncharacterized protein
TrEMBLC5WTM50.0C5WTM5_SORBI; Uncharacterized protein
STRINGSb01g043110.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-14B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]