PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G451000.1.p
Common NameSb01g042400, SORBIDRAFT_01g042400
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARR-B
Protein Properties Length: 687aa    MW: 73679.8 Da    PI: 6.734
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G451000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.2e-28201254155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Sobic.001G451000.1.p 201 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 254
                           79*******************.********************************8 PP
2Response_reg77.54.9e-26171251109
                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                           vl+vdD+p+ + +l+++l + +y +v+++ +++ al++l+e++  +D+i+ D+ mp+mdG++ll+     e++lp+i+++a +  + + 
  Sobic.001G451000.1.p  17 VLVVDDDPTCLLVLKRMLLDCRY-DVTTCPQATRALTMLRENRrgFDVIISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADSRTDIVM 103
                           89*********************.***************99999********************87754.558**************** PP

                           HHHHTTESEEEESS--HHHHHH CS
          Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                           + +k Ga d+l Kp+ +eel +
  Sobic.001G451000.1.p 104 KGIKHGACDYLIKPVRMEELKN 125
                           *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.7E-1801669IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.9E-4214150No hitNo description
SuperFamilySSF521722.28E-3614139IPR011006CheY-like superfamily
SMARTSM004484.1E-3015127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.37416131IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.6E-2317125IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.00E-2718130No hitNo description
Gene3DG3DSA:1.10.10.601.1E-29198259IPR009057Homeodomain-like
PROSITE profilePS5129411.674198257IPR017930Myb domain
SuperFamilySSF466899.14E-20198258IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-25201254IPR006447Myb domain, plants
PfamPF002497.8E-7203252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MAAAEARGGE FPVGMKVLVV DDDPTCLLVL KRMLLDCRYD VTTCPQATRA LTMLRENRRG  60
FDVIISDVHM PDMDGFRLLE LVGLEMDLPV IMMSADSRTD IVMKGIKHGA CDYLIKPVRM  120
EELKNIWQHV VRKKFNENKD HEHSGSLDDT DRNRPTNNDN EYASSANDGG DGSWKSQKKK  180
REKEDDETDL ENGDPSSTSK KPRVVWSVEL HQQFVNAVNH LGIDKAVPKK ILELMNVPGL  240
TRENVASHLQ KFRLYLKRIA QHHAGIPHPF VAPASSAKVA PLGGLEFQAL AASGQIPPQA  300
LAALQDELLG RPTSSLALPG RDQSSLRLAA IKGNKSHGER EIAFGQPIYK CQNNAYGAFP  360
QSSPSVGGLP SFAAWPNNKL GMTDSPSTLG NVGSSQNNNM LLHELQQQPD TLLSGTLHNI  420
DVKPSGVVMP SQSLNAFPAS EGISPNQNPL ILPSQSSSFL ASIPPSMKHE PLLGSPSPST  480
SLLGGLDMVN QASTSQPLIS SHGANLPGLI NRSTNAMPSP GINNFQSGNI PYLVNQNAMG  540
VSSRPPGVLK TESTDSLSRS YGYIGGSTSV DSVLLSSQSK NAQYGLLQSQ NDVSGSWSPS  600
QDFDSFGNSL GQGHPGSTSS NFQSSALGKL PDQGRGRNHG FVGKGTCIPS RFAVDEVESP  660
TNNLSHSIGN SGDIVNPDIF GFSGQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-24197260164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.123990.0callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G451000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0601300.0AB060130.1 Zea mays ZmRR8 mRNA for response regulator 8, complete cds.
GenBankEU9755450.0EU975545.1 Zea mays clone 492147 two-component response regulator ARR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468245.10.0two-component response regulator ORR21
RefseqXP_021306470.10.0two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLC5WSM40.0C5WSM4_SORBI; Two-component response regulator
STRINGSb01g042400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-114response regulator 2