PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G443700.2.p | ||||||||
Common Name | Sb01g041690, SORBIDRAFT_01g041690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 27831.5 Da PI: 5.9507 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.9 | 2.8e-14 | 19 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEd l + v ++G+ +W++I++ + gR +k+c++rw ++l Sobic.001G443700.2.p 19 KSAWTKEEDAVLREQVLLHGPQNWAAISEALA-GRNPKSCRLRWCQHL 65 579*****************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 34.9 | 3.7e-11 | 74 | 116 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ede+++ +G++ W+tIa ++ gRt++ +k+rw+++ Sobic.001G443700.2.p 74 PFTPLEDEKIIASYCVFGSK-WATIAGFLP-GRTDNAIKNRWHSV 116 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.928 | 14 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.44E-28 | 18 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-14 | 18 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-18 | 18 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-13 | 19 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.72E-13 | 21 | 65 | No hit | No description |
SMART | SM00717 | 6.1E-8 | 71 | 119 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 12.859 | 73 | 121 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-17 | 74 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.10E-8 | 74 | 117 | No hit | No description |
Pfam | PF00249 | 7.5E-9 | 74 | 117 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MAVPEEAAVG DGRPVATKKS AWTKEEDAVL REQVLLHGPQ NWAAISEALA GRNPKSCRLR 60 WCQHLSPLVD TARPFTPLED EKIIASYCVF GSKWATIAGF LPGRTDNAIK NRWHSVLSKV 120 YQQQQRAAAP IRRLPDGTLV LFPLTPGDVK AFRMDTIPVP RHPPPGIGLS GECLNLFPLV 180 AGDLVRGNNA SEAAAMVVDC STDESLVELR LWPSTNHDGG VQDDESLAEL RLWPSTNHGG 240 GVQGDGAGSS GAQDCLVSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 6e-29 | 19 | 119 | 2 | 101 | MYB3 |
3zqc_D | 6e-29 | 19 | 119 | 2 | 101 | MYB3 |
3zqc_G | 6e-29 | 19 | 119 | 2 | 101 | MYB3 |
3zqc_J | 6e-29 | 19 | 119 | 2 | 101 | MYB3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G443700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002468207.1 | 0.0 | myb-related protein B | ||||
TrEMBL | A0A1Z5SAW0 | 0.0 | A0A1Z5SAW0_SORBI; Uncharacterized protein | ||||
STRING | Sb01g041690.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 2e-35 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G443700.2.p |
Entrez Gene | 8085235 |