PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G441500.3.p | ||||||||
Common Name | Sb01g041490, SORBIDRAFT_01g041490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 230aa MW: 23831.5 Da PI: 6.0145 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Sobic.001G441500.3.p 75 FTCNYCQRKFFSSQALGGHQNAH 97 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.12E-6 | 72 | 102 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 75 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MKSKEMCQEP CDELSEISSQ EASNSSGLIS LDLSLTVPVA AAAAAESSTT DNSNSNSGGA 60 LADAAVAARE PSRVFTCNYC QRKFFSSQAL GGHQNAHRRE RTLARRALRL DAAGPYGYYA 120 DVASLPLYGS GLYPIGIQAH ASTAAHPDQQ RREDAGAGAG AELRRPARGL LSPMPFLVAD 180 EEMSFGWPGS FRPAIPAAAA AAPAGSAALN SAGGVAMHAR EEPDLTLRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G441500.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184906 | 0.0 | KF184906.1 Saccharum hybrid cultivar R570 clone BAC 268F20 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465579.1 | 1e-165 | zinc finger protein 4 | ||||
Refseq | XP_021319251.1 | 1e-165 | zinc finger protein 4 | ||||
TrEMBL | C5WRK8 | 1e-163 | C5WRK8_SORBI; Uncharacterized protein | ||||
STRING | Sb01g041490.1 | 1e-164 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 2e-15 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G441500.3.p |
Entrez Gene | 8078868 |