PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G441500.2.p
Common NameSb01g041490, SORBIDRAFT_01g041490
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 230aa    MW: 23831.5 Da    PI: 6.0145
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G441500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000227597123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C++C + F ++  L  H++ H
  Sobic.001G441500.2.p 75 FTCNYCQRKFFSSQALGGHQNAH 97
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-672102No hitNo description
PROSITE profilePS5015711.32375102IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MKSKEMCQEP CDELSEISSQ EASNSSGLIS LDLSLTVPVA AAAAAESSTT DNSNSNSGGA  60
LADAAVAARE PSRVFTCNYC QRKFFSSQAL GGHQNAHRRE RTLARRALRL DAAGPYGYYA  120
DVASLPLYGS GLYPIGIQAH ASTAAHPDQQ RREDAGAGAG AELRRPARGL LSPMPFLVAD  180
EEMSFGWPGS FRPAIPAAAA AAPAGSAALN SAGGVAMHAR EEPDLTLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G441500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849060.0KF184906.1 Saccharum hybrid cultivar R570 clone BAC 268F20 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465579.11e-165zinc finger protein 4
RefseqXP_021319251.11e-165zinc finger protein 4
TrEMBLC5WRK81e-163C5WRK8_SORBI; Uncharacterized protein
STRINGSb01g041490.11e-164(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-15zinc finger protein 4