PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G435500.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YC
Protein Properties Length: 248aa    MW: 26178.4 Da    PI: 5.2637
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G435500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC169.63.8e-53461511101
                 NF-YC   1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 
                           ql++fw++q     + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++
  Sobic.001G435500.2.p  46 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIA 134
                           89*****997665555689********************************************************************** PP

                 NF-YC  85 rtdifdflvdivprdel 101
                           rtd+fdflvdivpr+e 
  Sobic.001G435500.2.p 135 RTDVFDFLVDIVPREEA 151
                           **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.22E-3231142IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.8E-3762133IPR009072Histone-fold
PfamPF008082.8E-2070133IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDNQPLPYST GQPPAPGGTP VVPGVPGAAG PPPVPHHHLL QQQQAQLQAF WAYQRQEAER  60
ASASDFKNHQ LPLARIKKIM KADEDVRMIS AEAPVLFAKA CELFILELTI RSWLHAEENK  120
RRTLQRNDVA AAIARTDVFD FLVDIVPREE AKEEPGSALG FAASGTGVVG GGAPGGAPAA  180
GMPYYYPPMG QPAPMMPAWH VPAWDPAWQQ GAADVDHSGS FSEEGQAGFA AGHGGPASFP  240
PAPPSSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5154148395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126RRTLQRN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G435500.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0857200.0BT085720.2 Zea mays full-length cDNA clone ZM_BFc0051B15 mRNA, complete cds.
GenBankEU9572200.0EU957220.1 Zea mays clone 1585988 nuclear transcription factor Y subunit C-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306558.11e-179nuclear transcription factor Y subunit C-2-like
RefseqXP_021306559.11e-179nuclear transcription factor Y subunit C-2-like
SwissprotA6BLW41e-96NFYC2_ORYSJ; Nuclear transcription factor Y subunit C-2
TrEMBLA0A1B6QPC51e-177A0A1B6QPC5_SORBI; Uncharacterized protein
STRINGSb01g040980.21e-178(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.26e-64nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]