PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.001G409200.1.p | ||||||||
Common Name | Sb01g038650, SORBIDRAFT_01g038650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 236aa MW: 25059.3 Da PI: 6.8668 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.4 | 7.9e-41 | 60 | 159 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq+q ++ Sobic.001G409200.1.p 60 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQKQANE 148 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 lk++la++++ Sobic.001G409200.1.p 149 LKVQLARAQAD 159 ******99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 5.23E-5 | 34 | 43 | No hit | No description |
PROSITE profile | PS50891 | 25.463 | 59 | 160 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-41 | 60 | 157 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MDYGNASTGS TAAPEQYNYC RSVSPPSRVS SCSPPPPPPP PPPAVLQVVG NVPPTVVLSP 60 CAACKILRRR CADGCVLAPY FPPTEPAKFT TAHRVFGASN IIKLLQDLPE SSRADAVSSM 120 VYEAEARLRD PVYGCAGAVC RLQKQANELK VQLARAQADL LNAQAQHANL LALFCVEMAN 180 RRGGNQQQHP SSPLTTTMDG GGGSSGLFGA AYQQTFYDSD LDSATWPDHE AQLWT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-41 | 59 | 162 | 10 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-41 | 59 | 162 | 10 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sbi.8638 | 1e-91 | leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.001G409200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU953937 | 0.0 | EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465424.1 | 1e-174 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 7e-63 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | C5WNK8 | 1e-172 | C5WNK8_SORBI; Uncharacterized protein | ||||
STRING | Sb01g038650.1 | 1e-173 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-55 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.001G409200.1.p |
Entrez Gene | 8081443 |