PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G390800.6.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 336aa    MW: 37433.4 Da    PI: 9.3488
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G390800.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-105092446
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46
                           k+ rr+++NReAAr+sR+RKka++++Le    +L +  ++L+
  Sobic.001G390800.6.p 50 QKVLRRLAQNREAARKSRLRKKAYVQQLESSKLKLASLEQELQ 92
                          5899*************************86666666555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-847110IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.2E-84794No hitNo description
PROSITE profilePS502179.2894993IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.88E-75194No hitNo description
PfamPF001702.0E-75192IPR004827Basic-leucine zipper domain
PROSITE patternPS0003605469IPR004827Basic-leucine zipper domain
PfamPF141445.3E-33133208IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MADASSRTDT STVVDMDDKN QRLENGQGGA MVLPSNSSDR SDRSDKPMDQ KVLRRLAQNR  60
EAARKSRLRK KAYVQQLESS KLKLASLEQE LQKARQQGIF ISSSGDQTHA MSGNGAMTFD  120
LEYSRWQEDQ NKQMNELRTA VNAHASDSDL RLIVDGIMAH YDEIFRLKGI AAKADVFHIL  180
SGMWKTPAER CFLWLGGFRS SELLKLLVNQ LEPLTEQQLM GLSNLQQSSQ QAEDALSQGM  240
EALQQSLAET LAGSLGPSGS SGNVANYMGQ MAMAMGKLGT LENFLRQADN LRQQTLHQMQ  300
RILTIRQAAR ALLAIHDYFS RLRALSSLWL ARPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.11901e-169callus| embryo| leaf| root| shoot
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G390800.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278050.0KJ727805.1 Zea mays clone pUT5757 bZIP transcription factor (bZIP52) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301439.10.0transcription factor TGA2.2
RefseqXP_021301443.10.0transcription factor TGA2.2
RefseqXP_021301445.10.0transcription factor TGA2.2
RefseqXP_021301449.10.0transcription factor TGA2.2
SwissprotQ6IVC30.0TGA22_ORYSJ; Transcription factor TGA2.2
TrEMBLA0A1B6QNL10.0A0A1B6QNL1_SORBI; Uncharacterized protein
STRINGSb01g037050.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-144TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Chern M,Fitzgerald HA,Canlas PE,Navarre DA,Ronald PC
    Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light.
    Mol. Plant Microbe Interact., 2005. 18(6): p. 511-20
    [PMID:15986920]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]