PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G386700.1.p | ||||||||
Common Name | Sb01g036680, SORBIDRAFT_01g036680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | G2-like | ||||||||
Protein Properties | Length: 354aa MW: 39237.5 Da PI: 7.5219 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 110 | 1.2e-34 | 47 | 101 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerFveav+qLGG++kAtPkti++lm+v+gLtl+h+kSHLQkYRl Sobic.001G386700.1.p 47 KPRLKWTPELHERFVEAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 101 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.302 | 44 | 104 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-33 | 45 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.05E-18 | 46 | 102 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-24 | 47 | 102 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.0E-11 | 49 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.3E-25 | 149 | 195 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MYHHQQQLQS HSHFLSSRQT FPPERHMILQ GGSIPAESGL VLSTDAKPRL KWTPELHERF 60 VEAVNQLGGP DKATPKTIMR LMGVPGLTLY HLKSHLQKYR LSKNIHAQAN GGNAKNVVGC 120 AMAMEKPPEG NGSPASHLNL GTQTNKSVHI GEALQMQIEV QRRLHEQLEV QRHLQLRIEA 180 QGKYLQSVLE KAQETLSKQN AGSVGVETAK MQLSELVSKV STECLQHSFT GFEEIEGSQI 240 LQGHTIQLGD GSVDSCLTAC DGSQKDQDIL SISLSAHRGK EIGGMAFDMQ AKERREDLFL 300 DKLSMMPPSH LDRHERDSFS MTRKAAKLDL NINDTTDGPQ NCKKIDLNGF NWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-21 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-21 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-21 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-21 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-21 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-21 | 47 | 103 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-21 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-21 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-21 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-21 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-21 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-21 | 46 | 103 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.8915 | 0.0 | shoot |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G386700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU943712 | 0.0 | EU943712.1 Zea mays clone 1680873 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002467933.1 | 0.0 | myb-related protein 2 | ||||
Swissprot | Q9SQQ9 | 1e-104 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | C5X1R0 | 0.0 | C5X1R0_SORBI; Uncharacterized protein | ||||
STRING | Sb01g036680.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3574 | 38 | 79 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-104 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G386700.1.p |
Entrez Gene | 8083688 |
Publications ? help Back to Top | |||
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