PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G386000.1.p | ||||||||
Common Name | Sb01g036590, SORBIDRAFT_01g036590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 39248.4 Da PI: 6.2511 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.6 | 8.3e-56 | 23 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdee++++yL++k+ ++++ vi evd++k+ePwdLp ++k +ekewyfF+++d+ky+tg+r+nrat++gyWkatgkd Sobic.001G386000.1.p 23 LPPGFRFHPTDEEIISHYLTHKALNHRFIS-GVIGEVDLNKCEPWDLPGRAKMGEKEWYFFCHKDRKYPTGTRTNRATETGYWKATGKD 110 79*************************766.89***************99999************************************ PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ke+++ +g lvg+kktLvfy+grap+gekt Wvmhe+rle Sobic.001G386000.1.p 111 KEIFRGRGILVGMKKTLVFYRGRAPRGEKTGWVMHEFRLE 150 *************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-64 | 18 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.135 | 23 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-28 | 24 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MSEVSVINQA EVEDAGAAGQ LDLPPGFRFH PTDEEIISHY LTHKALNHRF ISGVIGEVDL 60 NKCEPWDLPG RAKMGEKEWY FFCHKDRKYP TGTRTNRATE TGYWKATGKD KEIFRGRGIL 120 VGMKKTLVFY RGRAPRGEKT GWVMHEFRLE GKLPQPLPRS AKDEWAVCKV FNKELAARTE 180 PMAAAVAGAE LERVGSLGFL NELLDSAELP ALIGADVDEV IDFKGPASTS GLHAGAPGTS 240 YLPVKMEEHA LLQQMQYQQQ PPPMFYSSQY FSLPAMNSGD LPPAIRRYCK AEQQVVSSGQ 300 TASVVSPSRE TGLSTDRNAA GGGYAEISSA VTPSSSHQFL PELDDPVLNL ADLWKY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-54 | 17 | 174 | 9 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.7063 | 0.0 | ovary| panicle| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G386000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956395 | 0.0 | EU956395.1 Zea mays clone 1562064 GRAB2 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465330.1 | 0.0 | NAC domain-containing protein 79 | ||||
TrEMBL | C5X1Q2 | 0.0 | C5X1Q2_SORBI; Uncharacterized protein | ||||
STRING | Sb01g036590.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 7e-96 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G386000.1.p |
Entrez Gene | 8083682 |