PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.001G385800.1.p | ||||||||
Common Name | Sb01g036560, SORBIDRAFT_01g036560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 381aa MW: 41073.3 Da PI: 9.0345 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.9 | 1.9e-53 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeel+ +yL++++++ ++++ +i++vdiyk++PwdLp++++ ++kewyfFs+rd+ky++g r+nra+ sgyWkatg+d Sobic.001G385800.1.p 9 LPPGFRFHPTDEELILHYLRNRAANVPCPV-AIIADVDIYKFDPWDLPSRAAYGDKEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTD 96 79****************************.88***************888889*********************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ s+ +ge vg+kk Lvfy+gr pkg+kt+W+mheyrl Sobic.001G385800.1.p 97 KPIQSSaTGESVGVKKALVFYRGRPPKGTKTNWIMHEYRL 136 ****9988999***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-64 | 4 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.565 | 9 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-27 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 381 aa Download sequence Send to blast |
MIMANPDMLP PGFRFHPTDE ELILHYLRNR AANVPCPVAI IADVDIYKFD PWDLPSRAAY 60 GDKEWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIQ SSATGESVGV KKALVFYRGR 120 PPKGTKTNWI MHEYRLAADA HAAHTYRPMQ FRNASMRLDD SVLCRIYKKA SHAPSMAVPP 180 LSDHEQDEPA CGGGGFDDNP YAATSAAMIL QGASFPAMHA APAGAPQRMP RIPSLSELLF 240 SDPYFFEEGG MQQDMARLSN HHHQQQAPLL GRPITSQLLV NNGNSMMSGG GQIPQLDPPP 300 ASTSAAGDGA AGNKRKRSSA ETSTASASLL SSQQQASAGK KPNGSCFGAT TTFQIGNGLQ 360 LQGSSLGHQM LLHSSNMGMN * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-72 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-72 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-72 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-72 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-72 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-72 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-72 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-72 | 9 | 173 | 20 | 172 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sbi.8881 | 0.0 | callus| shoot |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.001G385800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ728029 | 0.0 | KJ728029.1 Zea mays clone pUT6168 NAC transcription factor (NAC44) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465328.1 | 0.0 | NAC transcription factor 29 | ||||
TrEMBL | C5X1P9 | 0.0 | C5X1P9_SORBI; NAC16 | ||||
STRING | Sb01g036560.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-82 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.001G385800.1.p |
Entrez Gene | 8084562 |