PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G384300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 444aa    MW: 48490 Da    PI: 6.0991
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G384300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like110.68e-35225279155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r+rWtpeLHe+Fv+av+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+
  Sobic.001G384300.1.p 225 KQRMRWTPELHECFVDAVNQLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRT 279
                           79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.969222282IPR017930Myb domain
SuperFamilySSF466892.69E-18223279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-32224281IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-26225279IPR006447Myb domain, plants
PfamPF002495.1E-10227278IPR001005SANT/Myb domain
PfamPF143792.6E-24308354IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MQSQKSRVLG AMSSSLPILP NPLKGSFPKP CNPQHIPMSR QLPDDSMPLR NDIHQSASLH  60
PRAGVIGAPY SGYSASPLDS VSNHDSQSMV APYISQSSSF ESFQSLSDTT PGTHTEAAWF  120
TSSMDVSPLY TDNIAAPDDN QIQSIRPAMT SDETAKQNDW WADIMNDDWK VILDATATDS  180
HSKAMIQTSN SATSLPAVNQ SASSHSMEIC PVASPPNSSN ASVAKQRMRW TPELHECFVD  240
AVNQLGGSEK ATPKGVLKLM KVDGLTIYHV KSHLQKYRTA RYKPDLSEGA SEKRTATEEL  300
VLDLKTSMDL TEALRLQMEV QKRLHEQLEI QRKLQLRIEE QGKYLQMMFE KQSQSSTDKV  360
QDPSSRDTVA KPSSTLSQSS NKDSGATMDP NGTGDSTKTA KLGERSSGSG VNQKLVEIES  420
DTEGGTDDGC KISQEKRHKL QDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-30224283160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-30224283160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-30224283160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-30224283160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-30224283160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-30224283160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-30224283160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-30224283160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.212750.0ovary| pollen
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q10LZ1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G384300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF8315330.0JF831533.1 Zea mays isolate A phosphate starvation protein (PHR1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306511.10.0protein PHOSPHATE STARVATION RESPONSE 1-like
RefseqXP_021306512.10.0protein PHOSPHATE STARVATION RESPONSE 1-like
RefseqXP_021306513.10.0protein PHOSPHATE STARVATION RESPONSE 1-like
RefseqXP_021306514.10.0protein PHOSPHATE STARVATION RESPONSE 1-like
SwissprotB8ANX91e-173PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1
TrEMBLA0A1B6QNE80.0A0A1B6QNE8_SORBI; Uncharacterized protein
STRINGSb01g036440.20.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19713789
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.18e-69phosphate starvation response 1