PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G381300.1.p
Common NameSb01g036180, SORBIDRAFT_01g036180
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 329aa    MW: 33954.2 Da    PI: 5.7198
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G381300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.41.9e-25110170259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg+ WrKYGqKe+++s++prsYYrCt++   gC+++++v+r+++d++  ++tY geH+++
  Sobic.001G381300.1.p 110 EDGHVWRKYGQKEIQDSPYPRSYYRCTHKtdqGCSARRQVQRCETDTSKYVVTYYGEHTCR 170
                           8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-27104172IPR003657WRKY domain
SuperFamilySSF1182901.27E-24108172IPR003657WRKY domain
SMARTSM007743.5E-35109171IPR003657WRKY domain
PROSITE profilePS5081125.385109172IPR003657WRKY domain
PfamPF031062.1E-24110170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MASSGSDVPA ARAAVAVNDL IQARDGAARL RAFLLQLDDQ RAAWAQLQID GVLTKLSSAM  60
SALDVSDAAG SDDGARPRPQ SGSSCGNKRK QSSSRRSQRP SDKKITANLE DGHVWRKYGQ  120
KEIQDSPYPR SYYRCTHKTD QGCSARRQVQ RCETDTSKYV VTYYGEHTCR DPSTIPLIDH  180
AAGALAELDR ANNLISFGPS GTSNDANAAA AASNAGASSS QYLQAMGGSA AADQLSTSWC  240
TSDDVFSSSA GSFMQVDQLI GAVVGGSAGV VTSAAAPDRG VVLGGVASGG RGTASFPTSP  300
NSLGFVVGSL GSIGGGGEDD DDMFRLDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-27105170469OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G381300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467907.10.0probable WRKY transcription factor 70
TrEMBLC5X0T70.0C5X0T7_SORBI; Uncharacterized protein
STRINGSb01g036180.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-21WRKY DNA-binding protein 55