PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G378900.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 352aa    MW: 38625.1 Da    PI: 8.6089
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G378900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-1874123154
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                           + y+GVr++  +g+WvAeIr p   + r +r +lg+fg+a eAa+a+++++ +++
  Sobic.001G378900.1.p  74 CPYRGVRQRT-WGKWVAEIRKP---N-RgTRLWLGTFGSALEAARAYDNMASQIY 123
                           67*****999.**********8...3.35********************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.15275132IPR001471AP2/ERF domain
SMARTSM003801.0E-2975138IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-1875132IPR016177DNA-binding domain
PfamPF008472.9E-1375124IPR001471AP2/ERF domain
PRINTSPR003672.0E-97687IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-2776132IPR001471AP2/ERF domain
CDDcd000184.05E-2476132No hitNo description
PRINTSPR003672.0E-998114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDHQLPPVAM EVAAMQRQRQ RQQQQFVNHL QVHQQQGTHH QPPPPQQQQQ QCFRLRQSRK  60
GCMKGKGGPD NQQCPYRGVR QRTWGKWVAE IRKPNRGTRL WLGTFGSALE AARAYDNMAS  120
QIYGDHALLN LQLPPPAVAA AAAGRGGPAV MVSSPSPNTV VAGPGAGAAA GHNRHHQYLQ  180
QQQKQAAMAA APMMMMPYYY SYSAGASSSN SGSFSNYSSS SPVTTAAVAA SPTYNYNNHQ  240
TFHMDHRPRH AAAVPQAQGC HIDDTTTTTT MEMQRHQQII RELAAALLHQ EPDDFMTRLP  300
EAEDFGLQGF QEVPPEVFDE AARSIWDHTA AAWSTPTMMI DSTAGAAQHQ Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1376133361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-1376133664ATERF1
3gcc_A3e-1376133664ATERF1
5wx9_A8e-1368131771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G378900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678419.11e-103dehydration-responsive element-binding protein 2C
TrEMBLC5X0R10.0C5X0R1_SORBI; Uncharacterized protein
STRINGGRMZM2G156737_P011e-103(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.12e-32ERF family protein