PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G360300.1.p
Common NameSb01g034410, SORBIDRAFT_01g034410
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 371aa    MW: 40718.2 Da    PI: 6.765
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G360300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.33.5e-28181381118
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk.sgyWkat 86 
                           lp G++F Ptd+elvv+yL++++++ +++l    + + +i++++P  L +k+++ +e +w+fF+ r++k+  g+r+nr+t  +g W+at
  Sobic.001G360300.1.p  18 LPSGYHFLPTDHELVVYYLRPRLADANHHLPLPiFVHERILNYHPDILIEKYRSyGEGRWFFFTDRERKHVGGNRPNRTTPgNGHWNAT 106
                           699*********************99977744437788**********8655552666********************77659****** PP

                   NAM  87 gkdkevlskkgelvglkktLvfykgrapkgek 118
                           g+ +++ s++g lvg+++tLvfy++++++ +k
  Sobic.001G360300.1.p 107 GSIRPIRSAGGVLVGCRRTLVFYEASRSRKKK 138
                           ***********************876666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-329136IPR003441NAC domain
PROSITE profilePS5100533.8218215IPR003441NAC domain
PfamPF023651.8E-1719185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSSLASIVCS LSKLELNLPS GYHFLPTDHE LVVYYLRPRL ADANHHLPLP IFVHERILNY  60
HPDILIEKYR SYGEGRWFFF TDRERKHVGG NRPNRTTPGN GHWNATGSIR PIRSAGGVLV  120
GCRRTLVFYE ASRSRKKKNQ AAGLPATEEE GEEEEEEEEK GDGGQAAAKA TKDGVKTEWT  180
MYEYESLASE AEFEAIRNGN ASKMDELVLC TIQKKKHSQE VGQRKKSTKR KTKEQGLEQE  240
AVPAAAAAGD VEQGTKMAAT LGGGSIVEHH MLQQNEIGNV MPAAEAHTFS GFFPSLSNSN  300
YGHLSTTMDH SGPSSVSFPS QQSHGAGSRT GVQGPLLNNQ VSLNHQDSDA ASTVEYDQRN  360
GVGFTQDHLR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-251522012173Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G360300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467804.10.0NAC domain-containing protein 67
TrEMBLC5WYQ30.0C5WYQ3_SORBI; Uncharacterized protein
STRINGSb01g034410.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158671313
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-27NAC family protein