PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G357000.3.p
Common NameSb01g034100, SORBIDRAFT_01g034100
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 138aa    MW: 14549.2 Da    PI: 6.7935
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G357000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000263151323
                          ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                          C++Cg+ F ++  L  H++ H
  Sobic.001G357000.3.p 31 CTYCGRKFHTSQALGGHQNAH 51
                          ******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.82E-72367No hitNo description
PROSITE profilePS5015711.782956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MERPELELEL DLGLSLLHRT APEEPPGFFL CTYCGRKFHT SQALGGHQNA HKYERTLAKR  60
HREMAAAAMR AASSVRGAGR GQVDADTVPG GAAGAASGVA GGEPEAAKNA RHADPPAAPW  120
QRGDVDRADD LDLSLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G357000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056864e-34AP005686.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0016E03.
GenBankAP0057474e-34AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17.
GenBankAP0149654e-34AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126174e-34CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465204.14e-95zinc finger protein STAMENLESS 1
TrEMBLC5WYM29e-94C5WYM2_SORBI; Uncharacterized protein
STRINGSb01g034100.11e-94(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.16e-15zinc finger protein 2