PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G356700.1.p
Common NameSb01g034080, SORBIDRAFT_01g034080
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 125aa    MW: 13829.6 Da    PI: 6.933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G356700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-053353323
                          ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                          C++Cg+ F ++  L  H++ H
  Sobic.001G356700.1.p 33 CTYCGRKFCTSQALGGHQNAH 53
                          ******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.36E-72271No hitNo description
PROSITE profilePS5015711.6143158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MEREQELDLE LTLLPSAWAT QEEEEAPGGF FLCTYCGRKF CTSQALGGHQ NAHKYERALA  60
KRRREIAAAL RKHHRVFATR PGQVDAGASP RPSGVVQVIT GSEPDAAETE RMRPVDQLDL  120
SLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G356700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9600651e-83EU960065.1 Zea mays clone 221533 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465203.12e-87zinc finger protein 2
TrEMBLC5WYM05e-86C5WYM0_SORBI; Uncharacterized protein
STRINGSb01g034080.18e-87(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.15e-16C2H2 family protein