PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G356000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 33661.9 Da PI: 8.1503 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+++G+g+W++++ g+ R+ k+c++rw +yl Sobic.001G356000.1.p 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVPGNTGLLRCSKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 7.7e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ Ed l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l Sobic.001G356000.1.p 67 RGGFSDHEDRLIVHLQALLGNR-WAAIASYLP-DRTDNDVKNYWNTHL 112 7889******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.64 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.20E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.114 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.3E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.81E-12 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRPPCCDKE GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PGNTGLLRCS KSCRLRWTNY 60 LRPGIRRGGF SDHEDRLIVH LQALLGNRWA AIASYLPDRT DNDVKNYWNT HLKKKLLLQH 120 QQRQRASTAA ASSLPSPSKG QWELKLQTDI DLARRALRDA LSVDAAAGPP GMAAAGSAPT 180 AAPAQPYAPT ARSVDGMLLD GWAAAPAAGR SCAVVGGTVI PAPAPATPPG ATDSTSGSSS 240 VLTTECSGSI SSASNKRAAP PVAAGHRLLL VHEENSTSAG QGEVPLSAIE SWLLEDAGGE 300 QKLPHESLLL DAALHNFGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-26 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 3e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-26 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-26 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G356000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962848 | 0.0 | EU962848.1 Zea mays clone 246006 myb transcription factor MYB30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021318713.1 | 0.0 | myb-related protein 306-like | ||||
Swissprot | P81392 | 2e-92 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A1B6QMW6 | 0.0 | A0A1B6QMW6_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G098179_P01 | 1e-147 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 3e-79 | myb domain protein 94 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G356000.1.p |
Publications ? help Back to Top | |||
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