PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G338600.2.p | ||||||||
Common Name | Sb01g032580, SORBIDRAFT_01g032580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | LBD | ||||||||
Protein Properties | Length: 329aa MW: 35573.4 Da PI: 6.464 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.4 | 1e-28 | 4 | 110 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal...peeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+ll+a +++ r+++++sl+yeA+ r+ +PvyG+vg+++ Sobic.001G338600.2.p 4 SCNGCRVLRKGCSDACTIRPCLqwiksPEAQANATVFLAKFYGRAGLLNLLAAPpaaQDHLRPAVFRSLLYEACGRIVNPVYGSVGLLW 92 6**************************************************98633356669*************************** PP DUF260 82 klqqqleqlkaelallke 99 ++q++ +q+++e++l ++ Sobic.001G338600.2.p 93 SGQWHACQAAVEAVLKGQ 110 ************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.793 | 3 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-23 | 4 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDACT IRPCLQWIKS PEAQANATVF LAKFYGRAGL LNLLAAPPAA 60 QDHLRPAVFR SLLYEACGRI VNPVYGSVGL LWSGQWHACQ AAVEAVLKGQ PVVQVDAAAA 120 PPLMLGGRRF DIRHVAKDPD AAAAADLLRV ARGRKRAASS SCTSSKPSGN KQRRASTGDN 180 DEPLTRRPGQ EAEEEPEPVV EHDHGHDEES AGSHDHHHHH LQAQQQGSEE DTDVEAASHS 240 HSHSHSHSHV SQAEPELQSH APPVSSTQQH ADEDDEEEEV GLELTLGLEP LVRQRQQQQP 300 KSSRYDDHSG LSLSAASSLI CLRLQLPA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.2660 | 0.0 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G338600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954764 | 1e-146 | EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ728404 | 1e-146 | KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465135.1 | 0.0 | LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 1e-71 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A1Z5S8Y3 | 0.0 | A0A1Z5S8Y3_SORBI; Uncharacterized protein | ||||
STRING | Sb01g032580.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 2e-58 | LOB domain-containing protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G338600.2.p |
Entrez Gene | 8069839 |