PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G333700.1.p
Common NameSb01g032230, SORBIDRAFT_01g032230
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 419aa    MW: 45138.8 Da    PI: 6.1663
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G333700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012271293123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+Cp Cg+ F +   L  H  +H
  Sobic.001G333700.1.p 271 YECPGCGRAFQSYQALGGHRASH 293
                           99********9999888888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.71E-71739No hitNo description
PROSITE profilePS501579.2861740IPR007087Zinc finger, C2H2
SMARTSM003550.61739IPR015880Zinc finger, C2H2-like
PfamPF139128.5E-51739IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576673.71E-7266293No hitNo description
PfamPF139128.4E-11270295IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492271298IPR007087Zinc finger, C2H2
SMARTSM003550.21271293IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280273293IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702354377IPR007087Zinc finger, C2H2
SMARTSM003550.27354376IPR015880Zinc finger, C2H2-like
PfamPF139129.4E-11354377IPR007087Zinc finger, C2H2
PROSITE patternPS000280356376IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MHTMGDVAVL TSSATRHSCK VCRKGFPCGR SLGGHMRSHS LAEVETALDD DDGGGGDDGG  60
GEEHQQRRGF DCVTAPPGAG GYGLRENPKK TRRLSSLNDC DDGGGVDERS SHGGGRGELL  120
STCASSEVDH ERRRARGGGM ELELERAREQ EDTVLIPTEP APGLMPPPRR RRRSMRVPAP  180
APPPPAPAFD KEPEDVALCL IMLSRDIIDH RRCSPAAGAE YSPEEDSTRR DYQYQYHHDD  240
TDYNDDASIG TKINKRKPNR GLVGDEKRGR YECPGCGRAF QSYQALGGHR ASHKRINSNC  300
SIAKAVVDHQ PEQSVETNTS SFSTASPDPN YGGADIAPTA VVALKAKPHK PIKFECPICF  360
RVFGSGQALG GHKRSHSIAG ELYERAHAVE DDGIGDDEQP LVSDGFLDLN LPAPGVED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G333700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465113.20.0zinc finger protein ZAT4
TrEMBLA0A1Z5S9770.0A0A1Z5S977_SORBI; Uncharacterized protein
STRINGSb01g032230.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Representative plantOGRP1266344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-24C2H2-like zinc finger protein