PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G332500.1.p
Common NameSb01g032120, SORBIDRAFT_01g032120
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 499aa    MW: 52628.6 Da    PI: 7.7741
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G332500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.4e-31215271259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           dDgynWrKYGqK vkg e+prsYY+Ct+a+Cpvkkkversa ++ +++i+Y+g+Hnh+
  Sobic.001G332500.1.p 215 DDGYNWRKYGQKAVKGGEYPRSYYKCTHASCPVKKKVERSA-EGYITQIIYRGQHNHQ 271
                           8****************************************.***************8 PP
2WRKY104.17.8e-33383441159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  Sobic.001G332500.1.p 383 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 441
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-27212273IPR003657WRKY domain
SuperFamilySSF1182901.06E-24213273IPR003657WRKY domain
SMARTSM007743.2E-32214272IPR003657WRKY domain
PROSITE profilePS5081123.445215273IPR003657WRKY domain
PfamPF031069.6E-24215271IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-36370443IPR003657WRKY domain
SuperFamilySSF1182903.92E-29375443IPR003657WRKY domain
PROSITE profilePS5081137.172378443IPR003657WRKY domain
SMARTSM007741.0E-38383442IPR003657WRKY domain
PfamPF031061.8E-25384441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAAREASAAA PAPGPAGDGP SRPPRPTLAL PPRSAVESLF ASSGASSAGA AAETSPGPLT  60
LAAALFPDGA PSPAFHGSFT QLLVGAIGSP AAVPSPPSPF AVPPGLSPAT LLGSPGLFSP  120
TGSFEMSHQQ ALAQVTAQAV HSQYNMINHA DYAIPFSSTT TPALITAQHA NSSANVTSAQ  180
EKPALPSHTG NSKIESNEVS QGLKPSAPTF DKPADDGYNW RKYGQKAVKG GEYPRSYYKC  240
THASCPVKKK VERSAEGYIT QIIYRGQHNH QRPPKRRSKD GGGLLNEADD FHENEDTSTR  300
SEPGSQDHSG KHEGSNDGIA GPSVSRRGEG HEQLSGSSDS DEERDDEQRA GNGDPGYANA  360
NRRHVPTPAQ RIIVQTNSEV DLLDDGYRWR KYGQKVVKGN PHPRSYYKCT YQGCDVKKHI  420
ERSSQDPKAV ITTYEGKHSH DVPAARNSSH AAANANCSSS TSVPHRVQSS ASSSRRVADL  480
QSTSSASSML LKEENEIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37215444878Probable WRKY transcription factor 4
2lex_A3e-37215444878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271276RPPKRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G332500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9577240.0EU957724.1 Zea mays clone 1612894 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657198.20.0probable WRKY transcription factor 4
SwissprotQ9XI901e-106WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLC5WVP70.0C5WVP7_SORBI; Uncharacterized protein
STRINGSb01g032120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.13e-79WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]