PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.001G316800.1.p | ||||||||
Common Name | Sb01g030760, SORBIDRAFT_01g030760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 36666 Da PI: 6.2371 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.7 | 2.3e-53 | 5 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi++vd+y++ePwdL++ k+ e+++wyfFs +d+ky+tg+r+nrat +g+Wkat Sobic.001G316800.1.p 5 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDVDLYRIEPWDLQEhcKIGYeEQSDWYFFSYKDRKYPTGTRTNRATLTGFWKAT 92 69****************************.9***************953433332556****************************** PP NAM 87 gkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129 g+dk+v ++ +g l+g++ktLvfy+grap+g+ktdW+mheyrle Sobic.001G316800.1.p 93 GRDKAVRDTkhgGGGLIGMRKTLVFYTGRAPNGRKTDWIMHEYRLE 138 ******9987777788****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-59 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.315 | 5 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-28 | 6 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 334 aa Download sequence Send to blast |
MESCVPPGFR FHPTDEELVG YYLRKKVASQ KIDLDVIRDV DLYRIEPWDL QEHCKIGYEE 60 QSDWYFFSYK DRKYPTGTRT NRATLTGFWK ATGRDKAVRD TKHGGGGLIG MRKTLVFYTG 120 RAPNGRKTDW IMHEYRLETD ENAAPQEEGW VVCRAFKKRT MHPPRSSVAG AWDRSYSYYH 180 DPIVASAAAR FKQESPAEPD GAAAAAAASA ALLQYSSRLA ELPQLESPPL MAPHQGSHLM 240 ALVDGEGDSA ATTDWRALDR FVASQLSPDE ERSAGQGPGL HPEYCGGKPP LGTHAAGNNE 300 DASDMAALLL LDGVRHGEAG LLGSVADPAC LHT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-47 | 2 | 160 | 12 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. | |||||
Uniprot | TISSUE SPECIFICITY: Detected in root protoxylem and metaxylem poles and in vessels of protoxylems, outermost metaxylems, inner metaxylems, shoots and hypocotyls (PubMed:18445131). Expressed in roots, hypocotyls, cotyledons and leaves. Present in developing xylems (PubMed:16103214, PubMed:16581911). Specifically expressed in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.001G316800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002467597.1 | 0.0 | NAC domain-containing protein 105 | ||||
Swissprot | O65508 | 1e-108 | NAC76_ARATH; NAC domain-containing protein 76 | ||||
TrEMBL | C5WUG9 | 0.0 | C5WUG9_SORBI; Uncharacterized protein | ||||
STRING | Sb01g030760.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3625 | 37 | 68 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36160.1 | 1e-108 | NAC domain containing protein 76 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.001G316800.1.p |
Entrez Gene | 8062617 |
Publications ? help Back to Top | |||
---|---|---|---|
|