PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G314900.8.p | ||||||||
Common Name | Sb01g030620, SORBIDRAFT_01g030620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | TALE | ||||||||
Protein Properties | Length: 400aa MW: 42370 Da PI: 7.6529 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28 | 3.7e-09 | 129 | 166 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Sobic.001G314900.8.p 129 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 166 664459******************************88 PP | |||||||
2 | BELL | 73 | 4.8e-24 | 2 | 55 | 18 | 71 |
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 +V++rY++y+eq+++v++sFeavag +a Yt+lA+++iS+hFr+L+d +a q Sobic.001G314900.8.p 2 QVERRYRRYREQMRAVAGSFEAVAGEQAAVAYTRLASRTISKHFRSLRDGVAAQ 55 79*************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 1.3E-19 | 2 | 52 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.228 | 107 | 170 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-9 | 110 | 174 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.24E-13 | 110 | 171 | No hit | No description |
SuperFamily | SSF46689 | 8.55E-18 | 111 | 178 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-28 | 113 | 176 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.7E-18 | 127 | 166 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MQVERRYRRY REQMRAVAGS FEAVAGEQAA VAYTRLASRT ISKHFRSLRD GVAAQMQVVR 60 RALGEKDADG GVPAAGGMVK GETTPRLRVI DQCLRQHRAY QAGVLESQPW RPQRGLPERA 120 VSILRAWLFE HFLHPYPSDV DKHILARQTG LSRSQVSNWF INARVRLWKP MVEEMYSEEM 180 KDPQEGGGGA ACSNANNNSV NTSSYTSELG QQQLGHGGGA SGVDGRGGER KPTRAQLLVH 240 DAGSLASVVS IGSSSRDQQQ QMSSINFGMM DHLDFDAYND DPTAAGPGGP AGGFGAGGSG 300 GVSLTLGLQH QHADDPHGGV NIAFAGAAPS AAHEFLFMAG GGEQQMVAGG AVHPSHGHGH 360 GHHGQFSAAG MQGDGVPSSH YHRGLSAATG FQLLHDLAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5bng_A | 9e-18 | 116 | 174 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 9e-18 | 116 | 174 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.129 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G314900.8.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957060 | 0.0 | EU957060.1 Zea mays clone 1581614 bell-like homeodomain protein 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465020.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_021305140.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_021305141.1 | 0.0 | homeobox protein BEL1 homolog | ||||
TrEMBL | A0A1Z5S8J0 | 0.0 | A0A1Z5S8J0_SORBI; Uncharacterized protein | ||||
STRING | Sb01g030620.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 3e-68 | BEL1-like homeodomain 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G314900.8.p |
Entrez Gene | 8062869 |