PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G314900.1.p | ||||||||
Common Name | Sb01g030620, SORBIDRAFT_01g030620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | TALE | ||||||||
Protein Properties | Length: 635aa MW: 66724 Da PI: 6.8333 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.9e-09 | 364 | 401 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Sobic.001G314900.1.p 364 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 401 664459******************************88 PP | |||||||
2 | BELL | 92 | 5.8e-30 | 222 | 290 | 3 | 71 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 elq+ kakL +l+eV++rY++y+eq+++v++sFeavag +a Yt+lA+++iS+hFr+L+d +a q Sobic.001G314900.1.p 222 SELQRLKAKLYAMLQEVERRYRRYREQMRAVAGSFEAVAGEQAAVAYTRLASRTISKHFRSLRDGVAAQ 290 689***************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.6E-42 | 158 | 289 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-39 | 164 | 287 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.228 | 342 | 405 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.63E-12 | 345 | 406 | No hit | No description |
SMART | SM00389 | 3.0E-9 | 345 | 409 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.71E-17 | 346 | 413 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-28 | 348 | 411 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.4E-18 | 362 | 401 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MAHDEQAGLA YADYFAAAAA AGAVATLVPE VDDDAVAGAG EEEEDLHLYG VHHQHGVELF 60 GPSRGHMLPA ATMMAGGHAA AAAHGKAAAL GLVDVDVASP VVGGHDFGDH HHRQQGLQAP 120 LSLALHHHHH QQQLGGGGVP RHNQLSAAWP GPQQQQGQGA AWHLRGSRFL RPTQQLLQEF 180 CTLPVDTTTT AAASKQPASE DGVGVGSSTS APSAQIHAMS ASELQRLKAK LYAMLQEVER 240 RYRRYREQMR AVAGSFEAVA GEQAAVAYTR LASRTISKHF RSLRDGVAAQ MQVVRRALGE 300 KDADGGVPAA GGMVKGETTP RLRVIDQCLR QHRAYQAGVL ESQPWRPQRG LPERAVSILR 360 AWLFEHFLHP YPSDVDKHIL ARQTGLSRSQ VSNWFINARV RLWKPMVEEM YSEEMKDPQE 420 GGGGAACSNA NNNSVNTSSY TSELGQQQLG HGGGASGVDG RGGERKPTRA QLLVHDAGSL 480 ASVVSIGSSS RDQQQQMSSI NFGMMDHLDF DAYNDDPTAA GPGGPAGGFG AGGSGGVSLT 540 LGLQHQHADD PHGGVNIAFA GAAPSAAHEF LFMAGGGEQQ MVAGGAVHPS HGHGHGHHGQ 600 FSAAGMQGDG VPSSHYHRGL SAATGFQLLH DLAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5bng_A | 3e-17 | 351 | 409 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 3e-17 | 351 | 409 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.129 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G314900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957060 | 0.0 | EU957060.1 Zea mays clone 1581614 bell-like homeodomain protein 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465020.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_021305140.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_021305141.1 | 0.0 | homeobox protein BEL1 homolog | ||||
TrEMBL | C5WUF2 | 0.0 | C5WUF2_SORBI; Uncharacterized protein | ||||
STRING | Sb01g030620.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 8e-77 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G314900.1.p |
Entrez Gene | 8062869 |