PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G314400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25930.7 Da PI: 10.0869 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.5 | 4.9e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaev +i+fs++gklye++s Sobic.001G314400.1.p 9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 66.9 | 6.7e-23 | 78 | 171 | 5 | 98 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 ++++ +++ ++ + ++ L +++e L++++R++lGe+Le++s++eL++Le +L ksl iR kK++ll +qi +l++ke++l ++nk+ Sobic.001G314400.1.p 78 VNNKTVQQDIQQVKADAVSLANRLEALEKTKRKFLGENLEECSIEELHNLEVKLAKSLHVIRGKKTQLLEQQITKLKEKERNLLKDNKE 166 4455778899******************************************************************************* PP K-box 94 Lrkkl 98 Lr k Sobic.001G314400.1.p 167 LRDKQ 171 **985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.805 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-32 | 3 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.95E-41 | 3 | 74 | No hit | No description |
PRINTS | PR00404 | 1.7E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.2E-23 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.519 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MVRGKTELKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVGLIVFSP RGKLYEFASA 60 ASLQKTIDRY RTYTRENVNN KTVQQDIQQV KADAVSLANR LEALEKTKRK FLGENLEECS 120 IEELHNLEVK LAKSLHVIRG KKTQLLEQQI TKLKEKERNL LKDNKELRDK QRNLQPPPEA 180 PPVLNRCLPP WPRNLPAPPS NDDMDVETEL YIGLPGRERS SNRDSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-17 | 1 | 73 | 1 | 72 | MEF2C |
5f28_B | 2e-17 | 1 | 73 | 1 | 72 | MEF2C |
5f28_C | 2e-17 | 1 | 73 | 1 | 72 | MEF2C |
5f28_D | 2e-17 | 1 | 73 | 1 | 72 | MEF2C |
6byy_A | 2e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-17 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.8376 | 0.0 | leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G314400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064823 | 0.0 | BT064823.1 Zea mays full-length cDNA clone ZM_BFb0180I10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021306910.1 | 1e-165 | MADS-box transcription factor 56-like isoform X1 | ||||
Swissprot | A2Z9Q7 | 1e-109 | MAD56_ORYSI; MADS-box transcription factor 56 | ||||
TrEMBL | A0A1B6QM74 | 1e-163 | A0A1B6QM74_SORBI; Uncharacterized protein | ||||
STRING | Sb01g030570.1 | 1e-164 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 1e-67 | AGAMOUS-like 19 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G314400.1.p |