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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.001G304500.1.p |
Common Name | Sb01g029650, SORBIDRAFT_01g029650 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
GRAS |
Protein Properties |
Length: 641aa MW: 66792.2 Da PI: 6.3412 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.001G304500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 284.3 | 3.5e-87 | 284 | 639 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87
v++L e+A+ ++gd+ a+++Larl+ + + +g+p+ R a+yf+eAL+ l+ + +a ++ +++++++ +l a+k+fsev
Sobic.001G304500.1.p 284 VDQLAEAAKLAEAGDAFGAREILARLNYRlpaVPTAGTPLLRSAFYFKEALRVALSP----TGEAPAAPVSTPYDVVLKLGAYKAFSEV 368
689*************************999455566*******************9....66666666677789************** PP
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
sP+l+f+hlt+ qa+l+++ g++r+H++Dfdi++G QW++L+q+La+R ++++l++T+++ ++s++ el+ ++e+L+ fA+elgv +
Sobic.001G304500.1.p 369 SPVLQFAHLTCVQAVLDELGGASRIHVLDFDIGMGEQWASLMQELAQR-CPAATLKVTALVTSASHHPLELNLIHENLSGFARELGVFL 456
***********************************************9.7889************************************ PP
GRAS 177 efnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
+f v+ ++++l++ eL ++ +g+a+aV+l + ++ + ++vL+lvk+l +kvvv v++ +d+++ +F++++++a++ +
Sobic.001G304500.1.p 457 QFAVF---NIDTLDPAELvAITSGDAVAVHLPVGSAHVA--------AMPAVLRLVKRLGAKVVVSVDHGCDRTELPFATHLFQAFQSC 534
****9...999999999945566***********99998........4566************************************** PP
GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
++l+ds++a ++++e+ + +Er+l++++++ v ++++ Wr + +aGF pv+ s++a++qa++ll++++ g+rve+
Sobic.001G304500.1.p 535 VSLLDSVDAV-GADAEAVARIERFLVQPDVELRVVSRHRA----SAPPPAWRTVFASAGFVPVQASTFAESQAEALLKRMALMGFRVEK 618
*******987.8999****************999998888....88999**************************************** PP
GRAS 354 esgslvlgWkdrpLvsvSaWr 374
+ g+l+l+W++ +LvsvSaWr
Sobic.001G304500.1.p 619 RGGALCLYWQRGELVSVSAWR 639
********************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0007623 | Biological Process | circadian rhythm |
GO:0048768 | Biological Process | root hair cell tip growth |
GO:0051301 | Biological Process | cell division |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 641 aa
Download sequence Send
to blast |
MRGMLFAGSA REGHAGTLLQ QQQQRQGLAA GKVSGAGDLW EPTSVLDHRH SPSPSPPTSV 60 STLSSPLGAA TAGVAALAGA NAKNVSPPPV AAAWPGGGPG EEAVAGGKEE WQLTPLDMGL 120 SAGEGWDAAG AVLSDGAAPP GLAPDHTFLR WIIGGEDASA AMGSVMDPPV LELDHAPSMM 180 SPAFGASMPF APAMEDVKAV PFGHTPNFLV HHHQHHPQPH AAFFGSHSHA SLDAAPQPKR 240 PHPMAGAPAP KLPSFPGPVA QPGGFAPALK PKAEAANDEA TAAVDQLAEA AKLAEAGDAF 300 GAREILARLN YRLPAVPTAG TPLLRSAFYF KEALRVALSP TGEAPAAPVS TPYDVVLKLG 360 AYKAFSEVSP VLQFAHLTCV QAVLDELGGA SRIHVLDFDI GMGEQWASLM QELAQRCPAA 420 TLKVTALVTS ASHHPLELNL IHENLSGFAR ELGVFLQFAV FNIDTLDPAE LVAITSGDAV 480 AVHLPVGSAH VAAMPAVLRL VKRLGAKVVV SVDHGCDRTE LPFATHLFQA FQSCVSLLDS 540 VDAVGADAEA VARIERFLVQ PDVELRVVSR HRASAPPPAW RTVFASAGFV PVQASTFAES 600 QAEALLKRMA LMGFRVEKRG GALCLYWQRG ELVSVSAWRC *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727757 | 0.0 | KJ727757.1 Zea mays clone pUT5701 GRAS transcription factor (GRAS33) mRNA, partial cds. |