PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G301100.1.p
Common NameSb01g029290, SORBIDRAFT_01g029290
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 289aa    MW: 32557.2 Da    PI: 8.2677
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G301100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.8e-14110155247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             WTt+E+ +++++ + +G g+Wk I+r++ + +t+ q+ s+ qky
  Sobic.001G301100.1.p 110 RFWTTDEHRQFLRGLHVYGRGNWKNISRHFVTSKTPVQVSSHAQKY 155
                           56*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.813104160IPR017930Myb domain
SuperFamilySSF466892.8E-16107160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-9108155IPR009057Homeodomain-like
SMARTSM007171.1E-10108158IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.3E-14109159IPR006447Myb domain, plants
PfamPF002493.7E-10112155IPR001005SANT/Myb domain
CDDcd001671.00E-9112156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDPKFKGEWS ASEVSMVKSL IEVDNANNNC ASDMNKKHNQ IMDELQSGNQ HVEASSNLMN  60
QPFGVFVGGL SMGNMEAFGG YQKEMFSTRN VKETPRRKPT PRKESQHNRR FWTTDEHRQF  120
LRGLHVYGRG NWKNISRHFV TSKTPVQVSS HAQKYFLRKE NGTKKQRYSI NDIGLYDFEP  180
LPQTNASAWE GATSGGGVYN TNHYSFCGHP TSINNAHAWS SVQYHTGHGS SNNIQMPTLA  240
IGQQQEQMGT SSSLVAPTME ADRGHLDWTS DKLGDLLDTQ WMMNMDMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G301100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467506.10.0transcription factor DIVARICATA
TrEMBLC5WSF40.0C5WSF4_SORBI; Uncharacterized protein
STRINGSb01g029290.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-23MYB family protein