PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G300201.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 538aa    MW: 55309.8 Da    PI: 6.7825
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G300201.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.48.3e-16322367555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hne Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  Sobic.001G300201.3.p 322 HNESERKRRDRINQKMKTLQKLVPNS-----NKTDKASMLDEVIDYLKQLQ 367
                           *************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.803317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-19320389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-17322371No hitNo description
Gene3DG3DSA:4.10.280.103.6E-18322378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-13322367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-18323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MNQCVPSWDL DDPALVVAAG GGGGGGLNHH QVSTTIAGGA PHRGLQVSAG GGAFAPVVLP  60
MSDQYYEVAE LTWEKGNISS HGLGLLNRPV PVQQHKYAPP PSSSQLQAIG GGGGGGSSGD  120
RETLEAVVGE AATRSSHFLS QRHPVPWVGV GGAAVDAVAR SAADALVPCA AARVHDEAAA  180
AEGGDAGAGP GSRRKRARVV GEDGGLVCAS QGSTAAAPGP RRRGESALLT LDYACCGTGG  240
ADDVCGFTTT TTNNSTSLER DDKGSPDTEN TSIGGGASDS RCFSRRSQRD GLCDEDENVV  300
INGDGAMRSS ISTKRSRAAA IHNESERKRR DRINQKMKTL QKLVPNSNKT DKASMLDEVI  360
DYLKQLQAQV QVMSRMSSMM MPMGMAMPQL HQMSVMAQMA QMAQMAQTMA QGMMNMGSLA  420
QPGYAGLTPP MMHPPPPFVP MSWADPAAAA TTSGAGAGAG PGPAAAAASS LAQHTGGGGA  480
AVPDAFSAFL ACQAQQSGQQ QQQQPPGSME AYNRMVALYQ KMNQLQQSEP SSNPSKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325330ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G300201.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464942.20.0transcription factor UNE10 isoform X2
TrEMBLA0A1Z5S8A50.0A0A1Z5S8A5_SORBI; Uncharacterized protein
STRINGSb01g029210.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-30bHLH family protein