PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G299800.1.p | ||||||||
Common Name | Sb01g029192, SORBIDRAFT_01g029192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 118aa MW: 13119.1 Da PI: 9.3365 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11 | 0.00078 | 70 | 99 | 7 | 36 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS CS HLH 7 erErrRRdriNsafeeLrellPk.askapsk 36 ++Er +++N+++ Lr+++Pk + ka++k Sobic.001G299800.1.p 70 MAERCCHKKLNDRLYMLRSVVPKiS-KAGNK 99 7899999****************55.66665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MLFEEKEKIE TLQIHSLPVP PPTRLRRWPP VGCCRSTPWR MLRGAAPWGS GAGGGSGRVK 60 KKGMPSKNLM AERCCHKKLN DRLYMLRSVV PKISKAGNKE VDEDDNEEAE YLGSDPD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G299800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035328 | 1e-49 | BT035328.1 Zea mays full-length cDNA clone ZM_BFb0055J11 mRNA, complete cds. | |||
GenBank | BT063483 | 1e-49 | BT063483.1 Zea mays full-length cDNA clone ZM_BFc0067N10 mRNA, complete cds. | |||
GenBank | EU974475 | 1e-49 | EU974475.1 Zea mays clone 450274 inducer of CBF expression 2 mRNA, complete cds. | |||
GenBank | KJ727752 | 1e-49 | KJ727752.1 Zea mays clone pUT5693 bHLH transcription factor (bHLH175) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464940.1 | 5e-82 | uncharacterized protein LOC8055654 | ||||
TrEMBL | C5WSD8 | 1e-80 | C5WSD8_SORBI; Uncharacterized protein | ||||
STRING | Sb01g029192.1 | 2e-81 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 9e-12 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G299800.1.p |
Entrez Gene | 8055654 |