PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G299600.1.p
Common NameSb01g029170, SORBIDRAFT_01g029170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 385aa    MW: 39347.4 Da    PI: 7.948
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G299600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.4e-18275310136
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 
                           C++C + kTp+WR gp g+ktLCnaCG+++++ +l+
  Sobic.001G299600.1.p 275 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 310
                           ********************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-16269319IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-14273333No hitNo description
PROSITE profilePS5011411.227273305IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-13273307IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.17E-13274321No hitNo description
PROSITE patternPS003440275300IPR000679Zinc finger, GATA-type
PfamPF003201.3E-15275310IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MASEWEMAAM GVELGMGMGT YHHHNASSIT TAPMSSHHSG AASYSTPHHH HHHYYGMPPM  60
GGDAMRVDDL LDLSTGAGAG AHDFFPTAAA ATDKGHQHHS GAMGEPSPTA NSSDHQTSLL  120
SFADEFYIPS EEAAELEWLS KFVDDSYSDM PNYSSAAHAA MAAAAAANAA AGNGGGGTSA  180
GGQDSCVTGA APGRGARSKR SRATAAAAAA WHSLVPRPPS QSSPSSSCSS SDFPSSNKPG  240
GARGGNGSRG KKSPASPGGG PAGVEVGLEG GVRRCTHCAS EKTPQWRTGP LGPKTLCNAC  300
GVRFKSGRLM PEYRPAASPT FVLTQHSNSH RKVMELRRQK ELILIRGSHS HRDAAAAAAA  360
AAAAAAGSAA GPRPELIFRD YGVC*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G299600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0688040.0BT068804.1 Zea mays full-length cDNA clone ZM_BFb0383N16 mRNA, complete cds.
GenBankBT0877980.0BT087798.1 Zea mays full-length cDNA clone ZM_BFb0206G21 mRNA, complete cds.
GenBankEU9562060.0EU956206.1 Zea mays clone 1559028 GATA transcription factor 9 mRNA, complete cds.
GenBankKJ7269570.0KJ726957.1 Zea mays clone pUT3655 C2C2-GATA transcription factor (GATA28) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464939.10.0GATA transcription factor 2
SwissprotO497411e-58GATA2_ARATH; GATA transcription factor 2
TrEMBLC5WSD60.0C5WSD6_SORBI; GATA transcription factor
STRINGSb01g029170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.19e-43GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]