PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G298100.1.p
Common NameSb01g029065, SORBIDRAFT_01g029065
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 300aa    MW: 31195.6 Da    PI: 4.3556
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G298100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.7e-1897146255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Sobic.001G298100.1.p  97 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 146
                           69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.6E-3297162IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2097157IPR016177DNA-binding domain
PfamPF008472.8E-1297146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3097157IPR001471AP2/ERF domain
PROSITE profilePS5103223.43397156IPR001471AP2/ERF domain
CDDcd000184.70E-2898158No hitNo description
PRINTSPR003671.6E-1098109IPR001471AP2/ERF domain
PRINTSPR003671.6E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAQELQLETS SSASATTTSS CTTSCCSSTV TDSSSSSPAA ANAAPAPRKR QAAEAEAEAE  60
AEAEAEAVEE EEEGCAGKTT APAAKKRKRS SEGKHPTYRG VRMRAWGKWV SEIREPRKKS  120
RIWLGTFPTA EMAARAHDVA ALAIKGRAAT AYLNFPDLAG VLPRAASAAP KDVQAAAALA  180
AAFTSPSSPS SEPGDDAGAP AAPCDAREEP AAAAKGGAAP EETAAEEREP VPLPPPVSQP  240
GTPSSSGVEE ERQLFDLPDL LLDIRDGFGC FPPMWAPLDT DVEEVVNAEL RLEEPLLWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16951561272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489KKRKRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G298100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4487891e-164AF448789.1 Zea mays DREB-like protein (dreb1) mRNA, complete cds.
GenBankAF4937991e-164AF493799.1 Zea mays DRE binding factor 2 (dbf2) mRNA, complete cds.
GenBankBT0651851e-164BT065185.2 Zea mays full-length cDNA clone ZM_BFb0024M03 mRNA, complete cds.
GenBankBT0664251e-164BT066425.2 Zea mays full-length cDNA clone ZM_BFc0155E15 mRNA, complete cds.
GenBankKJ7269091e-164KJ726909.1 Zea mays clone pUT3454 AP2-EREBP transcription factor (EREB1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464932.20.0ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ76e-51ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1B6QLY80.0A0A1B6QLY8_SORBI; Uncharacterized protein
STRINGSb01g029065.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.18e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]