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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.001G296300.1.p |
| Common Name | Sb01g028930, SORBIDRAFT_01g028930 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
ERF |
| Protein Properties |
Length: 278aa MW: 30096.8 Da PI: 7.6405 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.001G296300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 59.8 | 6.3e-19 | 105 | 155 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+++AeIrdp k +r++lg+++ta eAa+a+++a+ +l+g
Sobic.001G296300.1.p 105 RYRGVRQRP-WGKYAAEIRDP---ArKGARVWLGTYDTAVEAARAYDRAAFRLRG 155
7********.**********8...4445*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MALLREHLDL IRAHLLDDHH VAVTVSSDDS ASLQSSSPSP SQSPPGRSRP LPALSVSLPP 60
RPPAVDLQQQ HLWAPAPPPM QIHRQEQQHY CYPPEPEEEE DDFRRYRGVR QRPWGKYAAE 120
IRDPARKGAR VWLGTYDTAV EAARAYDRAA FRLRGSKAIL NFPNEVAFGA AARWAAAPAA 180
APQPSVTVAG NKRGRARSPQ EQDAGCLLVR EVKKERVQEP AAAAAGCGWD GKDTAASGGG 240
ADYFWEDESL KGAICSLPPL SPLSPHPHLA VPQLSVS*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots. Not expressed in cell culture. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
