PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G282400.1.p
Common NameSb01g027770, SORBIDRAFT_01g027770
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 428aa    MW: 46313.4 Da    PI: 6.4501
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G282400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30193251259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
  Sobic.001G282400.1.p 193 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSDHNHP 251
                           699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-31187253IPR003657WRKY domain
PROSITE profilePS5081132.742187253IPR003657WRKY domain
SuperFamilySSF1182904.58E-26190253IPR003657WRKY domain
SMARTSM007746.3E-37192252IPR003657WRKY domain
PfamPF031061.4E-25194251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MCDFFWLSPA DQAGDLSDVV RASLQPPPPP PHHHRLPPPE EEEGLLLLQA RVNFDGDDHD  60
EARSQQLVHG NGSMRLMLGS NGSGGCACDH AAALCPQHHP EAERLIPQPP MSGPQPQLCA  120
ASSFVVERDD DDAPVLEEHV LDMATAPHPH PHTSAIKRRK SQTKKVVCIP APVAAPPPGV  180
GGRPSTSGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCSARKQV ERSRTDPSML  240
VITYTSDHNH PWPTQRNALA GSTRPAFSSS SAARSHHHHH HHHHSAAAVP DTTLAHRHAS  300
NVAVADNATP GWSIISASVH HQLLKQEVVD VDNHPISKQP AQDAAADRDC LDMFADMDGA  360
LDVLCASNFH PKKQQQQVTA AQHLEKLPEE EDEHLLLGPD PFSFSFLDWV GASFGVGETA  420
ADNGDHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-23160254280Disease resistance protein RRS1
5w3x_D4e-23160254280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G282400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0187272e-79AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence.
GenBankAP0149662e-79AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-79CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankKC9546102e-79KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467424.10.0WRKY transcription factor 6
TrEMBLC5WQM80.0C5WQM8_SORBI; Uncharacterized protein
STRINGSb01g027770.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-54WRKY DNA-binding protein 35