PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G253900.1.p
Common NameSb01g022420, SORBIDRAFT_01g022420
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HD-ZIP
Protein Properties Length: 363aa    MW: 38678.9 Da    PI: 6.6179
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G253900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18122174456
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++++ eq+++Le+ Fe  +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  Sobic.001G253900.1.p 122 KRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 174
                           44799***********************************************9 PP
2HD-ZIP_I/II128.43.1e-41120212193
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           e+krrls eqv++LE+sFe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L +++++L++
  Sobic.001G253900.1.p 120 ERKRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDTLLSHNKKLQA 208
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elke 93 
                           e+++
  Sobic.001G253900.1.p 209 EIMA 212
                           9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.973116176IPR001356Homeobox domain
SuperFamilySSF466894.02E-19118178IPR009057Homeodomain-like
SMARTSM003892.5E-18119180IPR001356Homeobox domain
CDDcd000869.92E-17121177No hitNo description
PfamPF000468.8E-16122174IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-19123183IPR009057Homeodomain-like
PRINTSPR000315.4E-6147156IPR000047Helix-turn-helix motif
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PRINTSPR000315.4E-6156172IPR000047Helix-turn-helix motif
PfamPF021833.6E-12176215IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MKPMATNGMA PSFFPANFLL QMQQPLHHQQ QQEHHHHHHQ HHHDDHHLLA PPPPALVSPF  60
LHDFGGAMAA PPPMLAGGLG MGGDDSHLHA AEPQQQQDGG GVASDDEEVS AAAGGGCGGE  120
RKRRLSVEQV RTLERSFEVA NKLEPERKAQ LARALGLQPR QVAIWFQNRR ARWKTKQLEK  180
DYDALRRQLD AARAENDTLL SHNKKLQAEI MALKGGGGGG GGGGRHQEAA SELINLNVKE  240
TEASCSNRSE NSSEINLDIS RPPQAPPPAA DDSPTMNSYR GSLPFYASAT ARADIDQLLH  300
SGGGHPSPAP KMELGHGTAA DTPPATAAPG GGGGTFGSLL CGAAVDEQPP FWPWADGHHT  360
FQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124ERKRRL
2168176RRARWKTKQ
3213224KGGGGGGGGGGR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G253900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467274.10.0homeobox-leucine zipper protein HOX23
SwissprotA2Z7345e-96HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
SwissprotQ94GL55e-96HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBLC5WM880.0C5WM88_SORBI; Uncharacterized protein
STRINGSb01g022420.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.18e-52HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]