PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G252800.1.p | ||||||||
Common Name | Sb01g022330, SORBIDRAFT_01g022330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | Dof | ||||||||
Protein Properties | Length: 477aa MW: 49778 Da PI: 6.7751 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.4e-39 | 107 | 166 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ Sobic.001G252800.1.p 107 PDKVLPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNA 166 78999****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-31 | 103 | 164 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.8E-32 | 108 | 165 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.984 | 111 | 165 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 113 | 149 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MMAECQGGGG GDFLIKLFGK TIPVPESGDA KDLQQSSSSS SSTEQDHQDA HALDQENPHP 60 DSSDPSPQPE VVDAEDPKSS PETTHQKPGQ GNGSGDAASQ REKLKKPDKV LPCPRCNSMD 120 TKFCYFNNYN VNQPRHFCKN CQRYWTAGGA MRNVPVGAGR RKNKNAVAAS HFLHRVGAAC 180 GGGGDTLKTT NGTVLSFGGH GGGCVPPGPA CLDLVEQLSH HLAAPVIRNA GNNPGPCSEG 240 SSNCRDDNKT INDRSCVDEA AAANGDDGSV QHPASMNNGG ATVWPPPYSC APSPAAYFSS 300 GIAIPIYPAA PGYWGCMVPG AWSLPWPVQQ PPSSQSQGPA AGLSSSTSPT TTSAPSVSSS 360 GAADSHTLGL GKHPRDREEG DDGRNAKVWA PKTIRIDDVD EVARSSIWSL IGIKGDKAKQ 420 QDDDAAGGHK QKQLVGMVFE PKREATKKPA AMMTSSPLLH ANPVALTRSV AFQEGS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G252800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582399 | 0.0 | KC582399.1 Sorghum bicolor dof2 protein (dof2) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464638.1 | 0.0 | cyclic dof factor 1 | ||||
TrEMBL | C5WM75 | 0.0 | C5WM75_SORBI; Uncharacterized protein | ||||
STRING | Sb01g022330.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 2e-41 | cycling DOF factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G252800.1.p |
Entrez Gene | 8064932 |