PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G237600.1.p | ||||||||
Common Name | Sb01g021000, SORBIDRAFT_01g021000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 341aa MW: 36647.9 Da PI: 6.7927 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 85.1 | 5.5e-27 | 84 | 171 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneir 68 ++++Lr+++++ ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+ Sobic.001G237600.1.p 84 NGRGLRQFSMR---VCEKVESkGRTTYNEVADELVAEfsdpninidspdpdnpsaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQ 168 789********...*****999************************************************************.****** PP E2F_TDP 69 wkg 71 w+g Sobic.001G237600.1.p 169 WRG 171 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 2.1E-121 | 4 | 340 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 3.1E-44 | 79 | 177 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 4.3E-38 | 83 | 171 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 8.6E-25 | 85 | 171 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.18E-19 | 86 | 172 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 1.16E-40 | 176 | 279 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 8.89E-40 | 178 | 291 | No hit | No description |
SMART | SM01138 | 2.6E-80 | 178 | 338 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 8.2E-40 | 179 | 310 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MVSGAGPSGG AAHSASTGGG GGSPSDRGGA APSASASVST PASESTVARR LNGLDLQGDD 60 APSSQPAASK KKKKGSRAVG PDKNGRGLRQ FSMRVCEKVE SKGRTTYNEV ADELVAEFSD 120 PNINIDSPDP DNPSAQQYDE KNIRRRVYDA LNVLMAMEII SKDKKEIQWR GLPKTSMNDI 180 EELKTEVIRL KGRIDKKAAY LQDLQDQYVC LQNLVRRNEQ LYGSGDAPSG GVALPFILVK 240 TRPHATVEVE ISEDMQLVHF DFNSTPFELQ DDTFVLKAMG LSGKEENDCT QAPVVNGGEC 300 SSTPNNYWHQ SPQPPGPRGV RVPNSPPIPG ILKGRVKHEH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-34 | 77 | 176 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G237600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036566 | 0.0 | BT036566.1 Zea mays full-length cDNA clone ZM_BFb0123L22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464568.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
Swissprot | Q9FNY2 | 1e-128 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | C5X0H5 | 0.0 | C5X0H5_SORBI; Uncharacterized protein | ||||
STRING | Sb01g021000.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1283 | 38 | 109 | Representative plant | OGRP2511 | 17 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-118 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G237600.1.p |
Entrez Gene | 8059323 |