PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G234500.1.p | ||||||||
Common Name | Sb01g020555, SORBIDRAFT_01g020555 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 139aa MW: 14246.8 Da PI: 9.5811 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.3e-20 | 13 | 64 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +g+++AeIrdp + +r++lg+f+taeeAa+a+++a+ + +g Sobic.001G234500.1.p 13 TKYRGVRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAFAQRG 64 69********.**********8333..4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-14 | 13 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.58E-28 | 13 | 72 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-31 | 14 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.276 | 14 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-23 | 14 | 73 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.1E-33 | 14 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-12 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-12 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MEGGKDAAGG GGTKYRGVRK RPWGKFAAEI RDPERGGARV WLGTFDTAEE AARAYDRAAF 60 AQRGATAVLN FPGEIAGATR RGAGGSSSSS SAAAAAAPAA ASLRATGRGR GDGEKIELEC 120 LDDKILEDLL DDGKYGRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-28 | 12 | 75 | 3 | 66 | ATERF1 |
3gcc_A | 2e-28 | 12 | 75 | 3 | 66 | ATERF1 |
5wx9_A | 3e-28 | 1 | 75 | 1 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 10 | GGKDAAGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G234500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728277 | 1e-109 | KJ728277.1 Zea mays clone pUT6555 AP2-EREBP transcription factor (EREB74) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464556.2 | 4e-88 | ethylene-responsive transcription factor ERF096 | ||||
Swissprot | Q9LTC5 | 2e-35 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A1B6QKL0 | 2e-89 | A0A1B6QKL0_SORBI; Uncharacterized protein | ||||
STRING | Sb01g020555.1 | 1e-88 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 4e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G234500.1.p |
Entrez Gene | 8059300 |
Publications ? help Back to Top | |||
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