PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G219200.1.p

Common Name

Sb01g019270, SORBIDRAFT_01g019270

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

MYB

Protein Properties

Length: 297aa MW: 32541.2 Da PI: 4.8448

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G219200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.7	2.6e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++lv +++q G ++W++ +r g+ R++k+c++rw +yl Sobic.001G219200.1.p 14 RGAWSPEEDQRLVAYIQQNGHPNWRALPRQAGLLRCGKSCRLRWINYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	49.3	1.2e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E+ l+v+++++lG++ W++Ia+ ++ gRt++++k+ w+++ Sobic.001G219200.1.p 67 RGNFSADEEALIVRLHRELGNR-WSAIAAQLP-GRTDNEIKNVWHTH 111 89******************.*****.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.615	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.55E-28	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	9.26E-10	16	61	No hit	No description
PROSITE profile	PS51294	24.588	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-25	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-13	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-14	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.54E-10	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MGRAPCCEKE GLRRGAWSPE EDQRLVAYIQ QNGHPNWRAL PRQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF SADEEALIVR LHRELGNRWS AIAAQLPGRT DNEIKNVWHT HIKKRLEDGD 120 DGEDKKKAAR KSKPAAAAKR SSAAKKTADA NAVDNNSEQQ QPFLTASPGL SSSVSSGVTT 180 FSTATDSAAA VSSADNAATT SHQQEQEQEQ EQEQLGASKA EMDMEMESFI SSAEFPPIDD 240 TFWSSADVMD MGLGAMDEEL GLALAGPPSS STRDEDMEFW LKMLLEAGDM RDLSVL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-24	12	117	5	109	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G219200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HF679408	0.0	HF679408.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB2 protein.
GenBank	JQ255478	0.0	JQ255478.1 Saccharum hybrid cultivar Co 86032 MYB46 (MYB46) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464484.1	0.0	transcription factor MYB4
TrEMBL	C5WYF1	0.0	C5WYF1_SORBI; Uncharacterized protein
STRING	Sb01g019270.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	3e-65	myb domain protein 15

Link Out ? help Back to Top
Phytozome	Sobic.001G219200.1.p
Entrez Gene	8067417

Publications ? help Back to Top
H The R2R3-MYB transcription factors MYB14 and MYB15 regulate stilbene biosynthesis in Vitis vinifera. Plant Cell, 2013. 25(10): p. 4135-49 [PMID:24151295]