PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G217300.1.p
Common NameSb01g019130, SORBIDRAFT_01g019130
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 690aa    MW: 75404.9 Da    PI: 6.9412
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G217300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37.1e-24124225199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF
  Sobic.001G217300.1.p 124 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVF 210
                           89****************************996555555..8999******************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              +++ +el+v+++r+
  Sobic.001G217300.1.p 211 L--RTEHGELCVGIRRA 225
                           *..55999*******97 PP
2Auxin_resp119.42.8e-39280363183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                           aa+ a+++++FevvY+Prast+eFvvk+++v++a+++++++GmRfkmafetedss++++ +Gt+++ + +dp+rWpnS+Wr+L+
  Sobic.001G217300.1.p 280 AASLAASGQPFEVVYYPRASTPEFVVKAASVQNAMRNQWCPGMRFKMAFETEDSSRISWfMGTIASAQVADPIRWPNSPWRLLQ 363
                           688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-36115227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-29121228IPR015300DNA-binding pseudobarrel domain
CDDcd100173.92E-21123224No hitNo description
PfamPF023624.9E-22124225IPR003340B3 DNA binding domain
SMARTSM010198.5E-22124226IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929124226IPR003340B3 DNA binding domain
PfamPF065074.4E-34280363IPR010525Auxin response factor
PROSITE profilePS5174520.044594680IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MKEAREEERC LDPQLWHACA GGMVQMPPVR SRVYYFPQGH AEHAHAGGAA DLAAGARPLP  60
PLVLCAVTGV RFLADPETDE VFAKIRLVPL APGEVEFREP DEFGLGVGGV GVDPADAREK  120
LSSFAKTLTQ SDANNGGGFS VPRYCAETIF PKLDYRADPP VQTVLAKDVH GEVWKFRHIY  180
RGTPRRHLLT TGWSTFVNQK KLVAGDSIVF LRTEHGELCV GIRRAKRVSC GGMECMSGWN  240
APGYGALSAF LKDEEGKMIK GPGGYMRGRG KVKITDVVEA ASLAASGQPF EVVYYPRAST  300
PEFVVKAASV QNAMRNQWCP GMRFKMAFET EDSSRISWFM GTIASAQVAD PIRWPNSPWR  360
LLQVTWDEPD LLQNVKCVNP WLVEIVSSIP PIHLGPFSPP RKKLRMPQHP DFPFDGQLLN  420
PIFHGNPLGP SNSALRCFSD IAPAGIQGAR HAQFGLPLTD HQLSKLHLGL FQGGGFNRFD  480
AITPPSHISK GFVISSAPVN ESVSCLLTIG TPQATEKSDD RKKPHIMLFG KPILTEQQMN  540
SRGSRETFSP EVTGNSSSDG NVQKTGNVSD GSGSSICIGF SSQGHEASEL GLEAGHCKVF  600
MESEDVGRTI DLSVFGSYEE LYGQLADMFG IEKAEIMSHL CYRDAAGAVK HTGEEPFSDF  660
MKVARRLTII ESTEGRLQKP LIEYMMERA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-791138851392Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399405PRKKLRM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.26350.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G217300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0604670.0BT060467.1 Zea mays full-length cDNA clone ZM_BFb0003E21 mRNA, complete cds.
GenBankJX4285040.0JX428504.1 Zea mays subsp. mays clone pUT3102 ARF2 ARF type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467068.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLC5WYD50.0C5WYD5_SORBI; Auxin response factor
STRINGSb01g019130.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]