PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.001G206300.1.p | ||||||||
Common Name | Sb01g018240, SORBIDRAFT_01g018240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 262aa MW: 26378.4 Da PI: 9.273 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 103.5 | 1.2e-32 | 91 | 145 | 5 | 59 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++cprC+s+ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr++++ Sobic.001G206300.1.p 91 PRQCPRCQSANTKFCYYNNYSREQPRYLCKACRRHWTEGGTLRDVPVGGGRKNRR 145 679**********************************************987655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.1E-30 | 92 | 144 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.919 | 92 | 146 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 94 | 130 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-16 | 99 | 136 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MPSSFLTSPS SSASSHLSYL IPASARPPPP LAMGQGYGGA TGGISVVPTG GVVATTNALN 60 AAAAAPPPPR QGSASRNAGG AGHPPLPRPP PRQCPRCQSA NTKFCYYNNY SREQPRYLCK 120 ACRRHWTEGG TLRDVPVGGG RKNRRGAKGG SAKASASAAA AATNVLGVGG ADTFPDFLRQ 180 QLLQFQPGAA VGGGGYAIDL GAWQQMSAAT APPPPPQGTG GDVSTLGAAG TTAAEAEANC 240 VALQYWSEWQ QDGMPGFDGA C* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sbi.20287 | 5e-39 | callus |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.001G206300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727985 | 1e-158 | KJ727985.1 Zea mays clone pUT6101 C2C2-DOF transcription factor (DOF13) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464429.1 | 0.0 | dof zinc finger protein DOF2.4 | ||||
Refseq | XP_021307462.1 | 0.0 | dof zinc finger protein DOF2.4 | ||||
TrEMBL | C5WXA9 | 0.0 | C5WXA9_SORBI; Uncharacterized protein | ||||
STRING | Sb01g018240.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00940.1 | 4e-17 | Dof family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.001G206300.1.p |
Entrez Gene | 8065811 |