PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G204400.1.p | ||||||||
Common Name | Sb01g018060, SORBIDRAFT_01g018060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 27835.9 Da PI: 9.0873 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.2 | 1.9e-08 | 4 | 42 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+l+++ ++++G+ +g++R++ +c+srw++yl Sobic.001G204400.1.p 4 KGKWSKEEDDLIINHIQRHGS---------IGLRRCGRSCRSRWLNYL 42 79******************4.........5999************97 PP | |||||||
2 | Myb_DNA-binding | 31.2 | 5e-10 | 49 | 92 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++T E+ ++ + + G+ W+ Ia+ ++ gRt+ +k++w++ Sobic.001G204400.1.p 49 GNFTLAEERIICEMYSKRGSC-WSVIAAQLP-GRTDLAIKNYWNST 92 89*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.549 | 1 | 42 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.09E-22 | 3 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-6 | 3 | 44 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-7 | 4 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-12 | 5 | 49 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.394 | 43 | 97 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-9 | 47 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-9 | 49 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.30E-7 | 50 | 93 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 50 | 96 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MIKKGKWSKE EDDLIINHIQ RHGSIGLRRC GRSCRSRWLN YLRPGLKHGN FTLAEERIIC 60 EMYSKRGSCW SVIAAQLPGR TDLAIKNYWN STLKKKYLLP AARTAATWGR GSRRTCPSGS 120 TSSDAAGVPA RGLQLVVYSN EESSTAGSSS PSPSPVKPVL AGPTPAPVAA AGQEPIAAVP 180 NSGPVVRIEQ KPALASRLPL EKPLPREAGD QIGERLMDLV CAPASPIPLN FMEPELLACI 240 DGFDDTDSFL PWFDHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-23 | 2 | 96 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G204400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079888 | 1e-32 | AC079888.10 Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 1e-32 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 1e-32 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304595.1 | 1e-166 | transcription factor MYB4 | ||||
TrEMBL | A0A1B6QJZ3 | 0.0 | A0A1B6QJZ3_SORBI; Uncharacterized protein | ||||
STRING | Sb01g018060.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12228 | 26 | 38 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 2e-25 | myb domain protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G204400.1.p |
Entrez Gene | 8065795 |