PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G181100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 627aa    MW: 71474.9 Da    PI: 5.7688
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G181100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.76.3e-1122476181374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++ L++cA+a+  ++l  a++lL++++ +asp+gd  qRla yf+++L+arla+++s++y++l  ++t+    ++ l+a++lf+ v+P
  Sobic.001G181100.1.p 247 LRDHLMQCAQAIVVNNLPFASELLKKIRRHASPYGDGSQRLALYFANGLEARLAGTGSQMYQKLMEKRTR---ATDMLKAYRLFNAVCP 332
                           5789************************************************************999998...99************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           + ++++   Nq+I + ++g  +vHiiDf+i+ G+QWp+L+q +a++++gpp+lRiTg++ p++g      +e+tg+rLa++Ae ++vpf
  Sobic.001G181100.1.p 333 FARVAYYFSNQTIADLLNGRPKVHIIDFGITLGFQWPSLIQRFAKQEGGPPKLRITGIDVPQPGfrPCAIIEATGKRLAEYAEMFNVPF 421
                           ***************************************************************9999999******************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           e++  +a+++ed+ +e+L+++++E+l+Vn++++ ++l de+ +++s+rd+vL+++++++P+v+++   +  +n++ Fl rf e l +ys
  Sobic.001G181100.1.p 422 EYQG-IASQWEDICIENLNIDNDEVLIVNCMYRTKYLGDETEDIDSARDRVLRTMNRINPEVFILGIANGMYNNPFFLPRFREVLFHYS 509
                           ****.7*********************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           alfd+l+a++ r +e+r+ +Er l+g ++ nvvacegaer+er et+++W+ r  +aGFk++p+++ + k       k++ + + ++e+
  Sobic.001G181100.1.p 510 ALFDMLDATALRSDEDRVQIERDLFGASALNVVACEGAERIERPETYKQWQVRCLKAGFKQLPVDKAILKRSIDEKDKHYHEDFVIDED 598
                           *********99***********************************************************9999999999888****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           s +l++gWk+r + +vS+W+
  Sobic.001G181100.1.p 599 SRWLLQGWKGRIMHAVSSWK 618
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.745221598IPR005202Transcription factor GRAS
PfamPF035142.2E-109247618IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MGSLEYCEIN SNTTLDYINR LLMEEGTDEK ASIYQRHDAL QAMEKPFYDI LGQAYPSSPT  60
EAMISRDNQV DCPQDNYSEQ TCSGSFFTEN LGPQGMHLVA NDWASECDHL SLQFERGAEE  120
ANKFVPIIVQ LVDLDSNGLP DSNQMTKATI GQKGKHVSKI QSHPHVDLEF LEARSSKHLA  180
ISVSETTRDE MFDSVLLCDW QFHCDAAHLR EIKAKEANNS SQNVWRKGYG QGQMKSQGKK  240
KEEGIDLRDH LMQCAQAIVV NNLPFASELL KKIRRHASPY GDGSQRLALY FANGLEARLA  300
GTGSQMYQKL MEKRTRATDM LKAYRLFNAV CPFARVAYYF SNQTIADLLN GRPKVHIIDF  360
GITLGFQWPS LIQRFAKQEG GPPKLRITGI DVPQPGFRPC AIIEATGKRL AEYAEMFNVP  420
FEYQGIASQW EDICIENLNI DNDEVLIVNC MYRTKYLGDE TEDIDSARDR VLRTMNRINP  480
EVFILGIANG MYNNPFFLPR FREVLFHYSA LFDMLDATAL RSDEDRVQIE RDLFGASALN  540
VVACEGAERI ERPETYKQWQ VRCLKAGFKQ LPVDKAILKR SIDEKDKHYH EDFVIDEDSR  600
WLLQGWKGRI MHAVSSWKPK ESYTNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5423962010380Protein SCARECROW
5b3h_D2e-5423962010380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G181100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270160.0KJ727016.1 Zea mays clone pUT3997 GRAS transcription factor (GRAS60) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306859.10.0scarecrow-like protein 9
RefseqXP_021306860.10.0scarecrow-like protein 9
RefseqXP_021306861.10.0scarecrow-like protein 9
RefseqXP_021306862.10.0scarecrow-like protein 9
RefseqXP_021306863.10.0scarecrow-like protein 9
TrEMBLA0A1B6QJK60.0A0A1B6QJK6_SORBI; Uncharacterized protein
STRINGGRMZM2G089636_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-165GRAS family protein