PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G174100.1.p | ||||||||
Common Name | Sb01g015165, SORBIDRAFT_01g015165 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GRAS | ||||||||
Protein Properties | Length: 722aa MW: 81945.4 Da PI: 6.7321 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 319.1 | 9.2e-98 | 343 | 713 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lL++cA+ vs +d +la+ L+ +++++s +gd +qRla+++++ L+ rla+++ +ly++l +++ + +++l++++l vsP Sobic.001G174100.1.p 343 LRKLLIRCAQEVSVNDYTLASDRLNIIRQHSSVTGDDTQRLASCLVNCLEVRLAGTGGQLYHKLMTETCN---AVNTLKVYQLALAVSP 428 689***********************************************************99999998...999************* PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176 +l++ + N++I + +g+ +vHiiDf+i G+QWp+L++++a ++gpp++RiTg++ p++g +++ ++ g+ La++A+ ++vpf Sobic.001G174100.1.p 429 FLRVPYYFSNKTIIDVSKGKPKVHIIDFGICFGFQWPSLFEQFAGMEDGPPKVRITGIDLPQPGfrPNQMNKNAGQLLADYASMFNVPF 517 ***************************************************************9*999999****************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 e++ +++++e++ +++L+++++++l+Vn+ +++++l de+v + +rd+vL++++ ++Pkv+v+ + +++++ Fl+rf e +++ys Sobic.001G174100.1.p 518 EYKG-ISSKWETICIQDLNIEEDDVLIVNCLYRMKNLGDETVYFNCARDKVLNIIRMMKPKVFVHGVVNGSYSTPFFLTRFKEVMYHYS 605 ****.7*********************************************************************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 alfd l+ ++pr++e+r+ +Er + + +i n+vaceg+er+er e++++W+ r +aG++++pl+ +++k ++ + ++++d y v+ + Sobic.001G174100.1.p 606 ALFDILDRTVPRDNEARMILERDIYQCAILNAVACEGSERIERPESYKNWKLRNLKAGLEQLPLDPDIVKVIRDTMGQYHKD-YVVDVD 693 ********************************************************************************77.****** PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 +++lvlgWk+r L ++S W+ Sobic.001G174100.1.p 694 DQWLVLGWKGRILRAISTWK 713 *******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.925 | 317 | 694 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-95 | 343 | 713 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MESKDKSNSS FEDSPSTVNN PGCYATSQKF IDNPTNEHND LELCLHTPNP TVSSNSNSNG 60 HVASSTSSSA KIGPHPYEVS SNVESDWYRT NVTDYSANSW IASDVTLNYI NNLLMQEDSD 120 DRVRLHHGEY ALRAMEEPFN KLLGQNNPAY PHRLCNCDHL KNINDSVSKS CSICSVAIDS 180 TTSHSNHNLQ AFETPWSLSD IVKERKKFTQ STHIMELGLN VDGLSIAEKR SRDDQSLQVS 240 VVDKSNHASS EIHSGSYSRT EDFHLLEERS SKQFAVSFNG TTRDEMLDRV LLFSGHKLTN 300 EGIIFREMMT NKSTRNSQND QGRTSARWKT RVMKQHKKEV VDLRKLLIRC AQEVSVNDYT 360 LASDRLNIIR QHSSVTGDDT QRLASCLVNC LEVRLAGTGG QLYHKLMTET CNAVNTLKVY 420 QLALAVSPFL RVPYYFSNKT IIDVSKGKPK VHIIDFGICF GFQWPSLFEQ FAGMEDGPPK 480 VRITGIDLPQ PGFRPNQMNK NAGQLLADYA SMFNVPFEYK GISSKWETIC IQDLNIEEDD 540 VLIVNCLYRM KNLGDETVYF NCARDKVLNI IRMMKPKVFV HGVVNGSYST PFFLTRFKEV 600 MYHYSALFDI LDRTVPRDNE ARMILERDIY QCAILNAVAC EGSERIERPE SYKNWKLRNL 660 KAGLEQLPLD PDIVKVIRDT MGQYHKDYVV DVDDQWLVLG WKGRILRAIS TWKPSESYDG 720 N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-35 | 349 | 714 | 25 | 380 | Protein SCARECROW |
5b3h_A | 1e-35 | 349 | 714 | 24 | 379 | Protein SCARECROW |
5b3h_D | 1e-35 | 349 | 714 | 24 | 379 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G174100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466849.2 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | C5WT94 | 0.0 | C5WT94_SORBI; Uncharacterized protein | ||||
STRING | Sb01g015165.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11788 | 26 | 40 | Representative plant | OGRP11365 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-149 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G174100.1.p |
Entrez Gene | 8062979 |