PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G169400.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 524aa    MW: 55479.4 Da    PI: 4.9119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G169400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.2e-19137186255
                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Sobic.001G169400.2.p 137 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 186
                           789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.04E-30136193No hitNo description
PROSITE profilePS5103219.599137194IPR001471AP2/ERF domain
SMARTSM003801.1E-34137200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-27137193IPR001471AP2/ERF domain
PfamPF008471.5E-13137186IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-19137194IPR016177DNA-binding domain
PRINTSPR003679.2E-8138149IPR001471AP2/ERF domain
PRINTSPR003679.2E-8160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MHPGLLHPSS SSSSPAARTL YLYSAHPPHG MLIAHLAAEH EAFHFTTIDL RRTGLQLRAA  60
VCRPAGQHIH PPIMALKRKA CPSLADGDHI LASSTSTPLG TGAGNSFTPA AAAAMTESSW  120
AEAAAGAVVA AQRARKRFVG VRQRPSGRWV AEIKDTIQKI RVWLGTFDTA EEAARAYDEA  180
ACLLRGSNTR TNFWPRARAA AGAVVMPPPP HHQLVAPPPA APSALPSKVT SLLLLRLKKA  240
RTASASAVTQ EVPSAQHQGQ QGYGAGAGAV PEEYSFQVDD FLSYDSTTSD VKHEEGSTCS  300
QETEGGDGDE EEEVVACKEE DEAPLDFGFM DKRPSSAGGE GEADNNAGLQ YSPFEMVAAA  360
DLGDDDDGLE MEPPPTYAAG EGEGTGDGEP STAIHEVMKR MKYERKISAS LYALSGVSEC  420
LRMRIGDGGG SAAGKRELAL SGLRDACRNK RQQQEQGRRQ QVEDKEGNVV GHEECSSCSN  480
SFSSEATSSS PEATNDDDSP QEAKAVDNSD MLLWSSLDLP PIC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G169400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466826.20.0uncharacterized protein LOC8064505
TrEMBLA0A1Z5S6430.0A0A1Z5S643_SORBI; Uncharacterized protein
STRINGSb01g014810.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-20related to AP2 11