PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G169200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 248aa    MW: 25676.1 Da    PI: 6.7513
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G169200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.41.2e-292104198
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++++
  Sobic.001G169200.1.p   2 SCNGCRVLRKGCSDACVLRPSIewihgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTGN 90 
                           6*********************9999888999********************************************************* PP

                DUF260  85 qqleqlkaelallk 98 
                           ++l+q++a+++l++
  Sobic.001G169200.1.p  91 WDLCQAAADAVLRG 104
                           ********998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.4651107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-232100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIHGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRGDSLRAL STVPAAFTER  120
DMDGLYGDVV VGLATGTASS SSPDENNSSS APPSRKRRNV VVNGAGVVVR PTGCHQQQQP  180
AGLLQSCELD LCLTPALSPP PLAGGLLLGG GASDEYSATT TCEDHQPVTG GDHAEARTTP  240
ALLNLFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G169200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666861e-151AK366686.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045L18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302860.10.0LOB domain-containing protein 38
TrEMBLA0A1B6QJG11e-179A0A1B6QJG1_SORBI; Uncharacterized protein
STRINGSb01g014800.11e-124(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.17e-56LOB domain-containing protein 37